Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G131700.1 | Wheat | extracellular | 96.47 | 96.47 |
| TraesCS1D01G112900.1 | Wheat | extracellular | 84.12 | 84.12 |
| Zm00001d009826_P001 | Maize | extracellular | 61.18 | 70.75 |
| Os05t0165200-00 | Rice | extracellular | 65.88 | 65.88 |
| VIT_06s0004g07460.t01 | Wine grape | extracellular, golgi | 57.06 | 65.54 |
| EES17778 | Sorghum | extracellular, golgi | 65.88 | 65.12 |
| GSMUA_Achr6P32750_001 | Banana | extracellular, vacuole | 52.35 | 63.12 |
| GSMUA_Achr5P28030_001 | Banana | cytosol, extracellular | 47.65 | 58.27 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular | 48.82 | 58.04 |
| KRG98199 | Soybean | extracellular | 52.94 | 54.55 |
| KRH30160 | Soybean | extracellular | 53.53 | 54.49 |
| CDY24020 | Canola | extracellular | 50.0 | 53.8 |
| Solyc06g007370.1.1 | Tomato | extracellular | 50.0 | 53.46 |
| CDY54890 | Canola | extracellular, golgi | 52.94 | 53.25 |
| CDX84851 | Canola | extracellular | 49.41 | 53.16 |
| CDX84850 | Canola | extracellular | 49.41 | 53.16 |
| PGSC0003DMT400052957 | Potato | extracellular | 51.18 | 52.73 |
| AT1G06980.1 | Thale cress | extracellular, golgi | 52.35 | 52.66 |
| CDY02050 | Canola | extracellular | 49.41 | 52.5 |
| Bra030668.1-P | Field mustard | extracellular, golgi | 50.59 | 52.44 |
| CDX86506 | Canola | extracellular, golgi | 51.76 | 52.38 |
| CDX97836 | Canola | extracellular | 49.41 | 52.17 |
| Bra031549.1-P | Field mustard | extracellular, golgi | 51.18 | 52.1 |
| CDY15595 | Canola | extracellular, golgi | 50.0 | 51.83 |
| CDY09944 | Canola | extracellular, golgi | 50.59 | 51.5 |
| CDY10237 | Canola | extracellular, golgi | 51.18 | 51.48 |
| KRH72764 | Soybean | extracellular | 51.76 | 51.46 |
| KRH17122 | Soybean | extracellular, golgi | 50.0 | 50.9 |
| GSMUA_Achr9P04640_001 | Banana | extracellular | 44.71 | 50.0 |
| Bra022784.1-P | Field mustard | extracellular | 51.76 | 50.0 |
| TraesCS3A01G098800.1 | Wheat | extracellular | 50.0 | 50.0 |
| AT2G30230.1 | Thale cress | extracellular | 51.76 | 49.72 |
| Bra015540.1-P | Field mustard | extracellular, golgi | 49.41 | 49.7 |
| TraesCS4A01G114800.1 | Wheat | extracellular | 50.0 | 49.42 |
| Bra021621.1-P | Field mustard | extracellular | 50.59 | 48.04 |
| CDY29687 | Canola | extracellular | 50.59 | 48.04 |
| Bra018326.1-P | Field mustard | extracellular | 50.0 | 47.75 |
| TraesCS1A01G298300.1 | Wheat | extracellular, vacuole | 44.12 | 42.37 |
| TraesCS3A01G347700.1 | Wheat | extracellular | 41.76 | 42.26 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 38.24 | 33.51 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G111500.1 | EnsemblPlantsGene:TraesCS1A01G111500 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF26 | PFAM:PF14009 |
| SEG:seg | SignalP:SignalP-noTM | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:112927811..112928323
Molecular Weight (calculated)
18135.9 Da
IEP (calculated)
10.803
GRAVY (calculated)
-0.341
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLSGRV EEYGRPVAAG EILSANPNHV LSKPCSQGVV RRILIVSPES ELERGQIYFL IPASSVPAER KKKTGSTAGS
101: QGAAAVAPSR MANPGHGGKT RSHVKSKPSS DHGSGRDVRS EKRSLHRRRV STGGRTAVWR PHLECIVEGT
101: QGAAAVAPSR MANPGHGGKT RSHVKSKPSS DHGSGRDVRS EKRSLHRRRV STGGRTAVWR PHLECIVEGT
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN
Arabidopsis Description
6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.