CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29687	Canola	extracellular	98.76	88.83
CDY02050	Canola	extracellular	85.71	86.25
CDX84850	Canola	extracellular	80.12	81.65
CDY24020	Canola	extracellular	80.12	81.65
CDX84851	Canola	extracellular	80.12	81.65
AT2G30230.1	Thale cress	extracellular	82.61	75.14
CDY15595	Canola	extracellular, golgi	70.19	68.9
CDY54890	Canola	extracellular, golgi	72.05	68.64
CDY09944	Canola	extracellular, golgi	70.81	68.26
CDY10237	Canola	extracellular, golgi	70.81	67.46
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	60.87	66.22
CDX86506	Canola	extracellular, golgi	68.32	65.48
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	51.55	58.87
KRH30160	Soybean	extracellular	59.63	57.48
KRH17122	Soybean	extracellular, golgi	59.63	57.48
KRG98199	Soybean	extracellular	57.14	55.76
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	49.69	54.79
Solyc06g007370.1.1	Tomato	extracellular	54.04	54.72
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	47.2	54.68
GSMUA_Achr11P...	Banana	cytosol, extracellular	48.45	54.55
PGSC0003DMT400052957	Potato	extracellular	55.28	53.94
Zm00001d009826_P001	Maize	extracellular	47.83	52.38
KRH72764	Soybean	extracellular	54.66	51.46
EES17778	Sorghum	extracellular, golgi	54.66	51.16
TraesCS1D01G112900.1	Wheat	extracellular	52.17	49.41
TraesCS1B01G131700.1	Wheat	extracellular	52.17	49.41
TraesCS1A01G111500.1	Wheat	extracellular	52.17	49.41
HORVU4Hr1G055090.1	Barley	extracellular	51.55	48.82
TraesCS4D01G190800.1	Wheat	extracellular	51.55	48.82
GSMUA_Achr11P...	Banana	cytosol	50.31	48.8
EER95013	Sorghum	extracellular, vacuole	50.31	48.5
Zm00001d028798_P001	Maize	extracellular, vacuole	48.45	48.45
TraesCS4B01G189400.1	Wheat	extracellular, vacuole	50.93	48.24
Os05t0165200-00	Rice	extracellular	49.69	47.06
TraesCS4A01G114800.1	Wheat	extracellular	49.69	46.51
Os03t0298100-00	Rice	cytosol, extracellular	50.93	46.07
Os01t0165600-00	Rice	extracellular, golgi, mitochondrion, nucleus	45.96	43.53
Os01t0826800-01	Rice	vacuole	45.96	43.27
GSMUA_Achr9P04640_001	Banana	extracellular	40.37	42.76
TraesCS3A01G098800.1	Wheat	extracellular	44.72	42.35
TraesCS3D01G099200.1	Wheat	extracellular	44.1	42.26
CDX90174	Canola	cytosol, endoplasmic reticulum	44.72	42.11
Zm00001d039735_P001	Maize	extracellular	46.58	41.9
EES02407	Sorghum	extracellular, golgi, plasma membrane	47.2	41.3
Zm00001d043024_P001	Maize	extracellular	43.48	41.18
CDY43324	Canola	cytosol, endoplasmic reticulum	44.1	41.04
Os05t0474700-01	Rice	extracellular	43.48	40.94
EES18380	Sorghum	extracellular	46.58	40.32
TraesCS3B01G115000.1	Wheat	extracellular	42.24	40.24
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	43.48	39.55
TraesCS3B01G379600.1	Wheat	extracellular	39.75	39.26
Zm00001d038450_P001	Maize	vacuole	42.86	39.2
TraesCS1A01G298300.1	Wheat	extracellular, vacuole	42.86	38.98
EES03819	Sorghum	extracellular	42.86	38.98
TraesCS1D01G292900.1	Wheat	extracellular	42.24	38.86
Zm00001d012480_P001	Maize	extracellular	41.61	38.51
CDX94651	Canola	cytosol, extracellular	41.61	37.85
TraesCS3A01G347700.1	Wheat	extracellular	39.13	37.5
TraesCS3D01G341300.1	Wheat	extracellular	37.89	36.75
CDY15646	Canola	cytosol, extracellular	40.37	36.72
Os04t0630700-01	Rice	cytosol	18.01	26.85

Protein Annotations

EnsemblPlants:CDX97836	EnsemblPlantsGene:GSBRNA2T00105149001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26	PFAM:PF14009
ProteinID:CDX97836	ProteinID:CDX97836.1	SignalP:SignalP-noTM	UniParc:UPI0004EE5202	MapMan:35.2	:

Description

BnaC04g41030D

Coordinates

chrLK031901:-:883958..884497

Molecular Weight (calculated)

17955.8 Da

IEP (calculated)

8.386

GRAVY (calculated)

-0.354

Length

161 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITRPMTAG EILQANPNHV LSKPCSQGVV RKILVLSPES ELKRGSIYFL IPDTSLPEKK KTKNKKDIPR
101: RKKPLENANN ITSDHHTVSS TNKDLDLTLC EKYLEDVMLS SRSASVSMWR PHLDSISEDL N

Best Arabidopsis Sequence Match ( AT2G30230.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.