Factsheet for TraesCS1D01G292900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	84.0	83.05
TraesCS1A01G298300.1	Wheat	extracellular, vacuole	84.0	83.05
Os05t0474700-01	Rice	extracellular	71.43	73.1
Zm00001d038450_P001	Maize	vacuole	64.57	64.2
EES18380	Sorghum	extracellular	66.29	62.37
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	45.14	56.83
GSMUA_Achr11P...	Banana	cytosol, extracellular	46.29	56.64
TraesCS3D01G341300.1	Wheat	extracellular	52.57	55.42
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	43.43	53.9
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	44.0	52.03
KRH17122	Soybean	extracellular, golgi	42.86	44.91
TraesCS1D01G112900.1	Wheat	extracellular	43.43	44.71
GSMUA_Achr9P04640_001	Banana	extracellular	38.29	44.08
Solyc06g007370.1.1	Tomato	extracellular	39.43	43.4
KRH30160	Soybean	extracellular	41.14	43.11
KRG98199	Soybean	extracellular	40.57	43.03
TraesCS4D01G190800.1	Wheat	extracellular	41.71	42.94
PGSC0003DMT400052957	Potato	extracellular	40.0	42.42
CDX97836	Canola	extracellular	38.86	42.24
KRH72764	Soybean	extracellular	41.14	42.11
AT2G30230.1	Thale cress	extracellular	42.29	41.81
CDX84850	Canola	extracellular	37.71	41.77
CDY24020	Canola	extracellular	37.71	41.77
CDX84851	Canola	extracellular	37.71	41.77
TraesCS3D01G099200.1	Wheat	extracellular	40.0	41.67
AT1G06980.1	Thale cress	extracellular, golgi	40.0	41.42
Bra015540.1-P	Field mustard	extracellular, golgi	40.0	41.42
CDY02050	Canola	extracellular	37.71	41.25
Bra022784.1-P	Field mustard	extracellular	41.14	40.91
CDY54890	Canola	extracellular, golgi	39.43	40.83
Bra031549.1-P	Field mustard	extracellular, golgi	38.86	40.72
CDY09944	Canola	extracellular, golgi	38.86	40.72
Bra018326.1-P	Field mustard	extracellular	41.14	40.45
CDY15595	Canola	extracellular, golgi	37.71	40.24
Bra030668.1-P	Field mustard	extracellular, golgi	37.71	40.24
CDY10237	Canola	extracellular, golgi	38.86	40.24
CDY29687	Canola	extracellular	41.14	40.22
CDX86506	Canola	extracellular, golgi	38.29	39.88
Bra021621.1-P	Field mustard	extracellular	40.57	39.66
TraesCS3D01G295400.1	Wheat	extracellular	35.43	32.63

Protein Annotations

EnsemblPlants:TraesCS1D01G292900.1	EnsemblPlantsGene:TraesCS1D01G292900	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF16	PFAM:PF14009
SEG:seg	SignalP:SignalP-noTM	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1D:-:392026091..392026957

Molecular Weight (calculated)

18810.4 Da

IEP (calculated)

10.134

GRAVY (calculated)

-0.393

Length

175 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CMLPCGALDV VRVVHLSGHV DEFTCPLIAS DVLAAHPSHA LTAAGSAGAA RRIVIVSPDS ELRRGRIYFL IPTACSAPAA ELKRPKQQQQ
101: GHGACQSKTK RRHGHGHRKG GTAVAAAAST AEQDNYLREL LSEKRESGHR RRRSSSARAG VWRPRLESIA EESSD

Best Arabidopsis Sequence Match ( AT1G18290.1 )
(BLAST)

001: MGNTSSCAPL IISTNSSSGV VKILAPFTGT LEVFSKPIKT SDIVSRHSGH FITDSTLLQI SHRVTAVSPD EYLRPRRHLY LLLPTDMLFS VLTQEELSLI
101: SNKAAETLNK SRYNHLKRIF PVCIFPMTGD RRRNPSSVNE DRAHDGVEIR ETLDEKVLYE SKHGSWRPKL ETIVES

Arabidopsis Description

DUF4228 domain protein [Source:UniProtKB/TrEMBL;Acc:Q9LE02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.