Factsheet for TraesCS4D01G190800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G189400.1	Wheat	extracellular, vacuole	94.12	94.12
HORVU4Hr1G055090.1	Barley	extracellular	86.47	86.47
TraesCS4A01G114800.1	Wheat	extracellular	86.47	85.47
Zm00001d028798_P001	Maize	extracellular, vacuole	66.47	70.19
EER95013	Sorghum	extracellular, vacuole	64.71	65.87
Os03t0298100-00	Rice	cytosol, extracellular	64.71	61.8
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	47.06	56.74
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	48.24	55.41
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	45.29	55.4
GSMUA_Achr11P...	Banana	cytosol, extracellular	45.29	53.85
Solyc06g007370.1.1	Tomato	extracellular	48.24	51.57
CDX97836	Canola	extracellular	48.82	51.55
CDY24020	Canola	extracellular	47.06	50.63
CDY02050	Canola	extracellular	47.65	50.62
CDY15595	Canola	extracellular, golgi	48.24	50.0
TraesCS1D01G112900.1	Wheat	extracellular	50.0	50.0
Bra030668.1-P	Field mustard	extracellular, golgi	47.65	49.39
CDX84851	Canola	extracellular	45.88	49.37
CDX84850	Canola	extracellular	45.88	49.37
CDY10237	Canola	extracellular, golgi	48.24	48.52
KRH30160	Soybean	extracellular	47.65	48.5
CDY09944	Canola	extracellular, golgi	47.06	47.9
KRH17122	Soybean	extracellular, golgi	47.06	47.9
CDX86506	Canola	extracellular, golgi	47.06	47.62
Bra021621.1-P	Field mustard	extracellular	50.0	47.49
GSMUA_Achr9P04640_001	Banana	extracellular	42.35	47.37
Bra015540.1-P	Field mustard	extracellular, golgi	47.06	47.34
CDY54890	Canola	extracellular, golgi	47.06	47.34
Bra031549.1-P	Field mustard	extracellular, golgi	46.47	47.31
PGSC0003DMT400052957	Potato	extracellular	45.88	47.27
CDY29687	Canola	extracellular	49.41	46.93
KRG98199	Soybean	extracellular	45.29	46.67
Bra022784.1-P	Field mustard	extracellular	48.24	46.59
AT1G06980.1	Thale cress	extracellular, golgi	45.88	46.15
Bra018326.1-P	Field mustard	extracellular	48.24	46.07
AT2G30230.1	Thale cress	extracellular	47.06	45.2
TraesCS3D01G099200.1	Wheat	extracellular	42.94	43.45
TraesCS3D01G341300.1	Wheat	extracellular	41.76	42.77
KRH72764	Soybean	extracellular	42.35	42.11
TraesCS1D01G292900.1	Wheat	extracellular	42.94	41.71
TraesCS3D01G295400.1	Wheat	extracellular	37.06	33.16

Protein Annotations

EnsemblPlants:TraesCS4D01G190800.1	EnsemblPlantsGene:TraesCS4D01G190800	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF7	PFAM:PF14009
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:334109616..334110128

Molecular Weight (calculated)

18476.3 Da

IEP (calculated)

9.670

GRAVY (calculated)

-0.363

Length

170 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CVLPCGSFDL IRIVHLNGHI EEYSRPVTAG EVMAAHPSHV VSRPCSQGGA RRILIVDPDS ELERGCFYFL VPTSSVPEKK RKPSSQPQQK
101: KVRSSPTLKP TSVPSSAGAG ANKVTKDRGA GDSYLAEVLS EGKARCKRSR SVRATVWRPH LQIIPEEALE

Best Arabidopsis Sequence Match ( AT1G06980.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q9LMJ2]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.