Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54890 | Canola | extracellular, golgi | 82.84 | 82.84 |
| Bra031549.1-P | Field mustard | extracellular, golgi | 80.47 | 81.44 |
| CDY09944 | Canola | extracellular, golgi | 80.47 | 81.44 |
| Bra030668.1-P | Field mustard | extracellular, golgi | 76.92 | 79.27 |
| CDY10237 | Canola | extracellular, golgi | 78.7 | 78.7 |
| CDX86506 | Canola | extracellular, golgi | 71.6 | 72.02 |
| Bra015540.1-P | Field mustard | extracellular, golgi | 70.41 | 70.41 |
| CDY15595 | Canola | extracellular, golgi | 68.05 | 70.12 |
| VIT_06s0004g07460.t01 | Wine grape | extracellular, golgi | 58.58 | 66.89 |
| AT2G30230.1 | Thale cress | extracellular | 68.64 | 65.54 |
| GSMUA_Achr6P32750_001 | Banana | extracellular, vacuole | 51.48 | 61.7 |
| KRH30160 | Soybean | extracellular | 58.58 | 59.28 |
| KRH17122 | Soybean | extracellular, golgi | 58.58 | 59.28 |
| GSMUA_Achr5P29500_001 | Banana | extracellular, vacuole | 50.3 | 58.22 |
| KRG98199 | Soybean | extracellular | 56.21 | 57.58 |
| GSMUA_Achr5P28030_001 | Banana | cytosol, extracellular | 46.75 | 56.83 |
| Solyc06g007370.1.1 | Tomato | extracellular | 52.66 | 55.97 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular | 47.34 | 55.94 |
| Zm00001d009826_P001 | Maize | extracellular | 47.93 | 55.1 |
| PGSC0003DMT400052957 | Potato | extracellular | 53.25 | 54.55 |
| KRH72764 | Soybean | extracellular | 53.85 | 53.22 |
| TraesCS1D01G112900.1 | Wheat | extracellular | 53.25 | 52.94 |
| TraesCS1A01G111500.1 | Wheat | extracellular | 52.66 | 52.35 |
| TraesCS1B01G131700.1 | Wheat | extracellular | 52.66 | 52.35 |
| GSMUA_Achr11P... | Banana | cytosol | 50.89 | 51.81 |
| EES17778 | Sorghum | extracellular, golgi | 52.66 | 51.74 |
| Os05t0165200-00 | Rice | extracellular | 50.3 | 50.0 |
| Zm00001d028798_P001 | Maize | extracellular, vacuole | 46.75 | 49.07 |
| EER95013 | Sorghum | extracellular, vacuole | 47.93 | 48.5 |
| Os03t0298100-00 | Rice | cytosol, extracellular | 50.3 | 47.75 |
| HORVU4Hr1G055090.1 | Barley | extracellular | 47.93 | 47.65 |
| TraesCS4A01G114800.1 | Wheat | extracellular | 47.34 | 46.51 |
| TraesCS4D01G190800.1 | Wheat | extracellular | 46.15 | 45.88 |
| GSMUA_Achr9P04640_001 | Banana | extracellular | 40.83 | 45.39 |
| TraesCS4B01G189400.1 | Wheat | extracellular, vacuole | 45.56 | 45.29 |
| Os01t0165600-00 | Rice | extracellular, golgi, mitochondrion, nucleus | 44.38 | 44.12 |
| Os01t0826800-01 | Rice | vacuole | 43.79 | 43.27 |
| Zm00001d039735_P001 | Maize | extracellular | 45.56 | 43.02 |
| EES02407 | Sorghum | extracellular, golgi, plasma membrane | 46.75 | 42.93 |
| TraesCS3D01G099200.1 | Wheat | extracellular | 42.6 | 42.86 |
| Os05t0474700-01 | Rice | extracellular | 43.2 | 42.69 |
| TraesCS3B01G115000.1 | Wheat | extracellular | 42.6 | 42.6 |
| Zm00001d043024_P001 | Maize | extracellular | 42.6 | 42.35 |
| TraesCS3A01G098800.1 | Wheat | extracellular | 42.01 | 41.76 |
| TraesCS3B01G379600.1 | Wheat | extracellular | 40.24 | 41.72 |
| TraesCS1B01G307800.1 | Wheat | extracellular, vacuole | 42.01 | 40.11 |
| EES03819 | Sorghum | extracellular | 42.01 | 40.11 |
| TraesCS1D01G292900.1 | Wheat | extracellular | 41.42 | 40.0 |
| EES18380 | Sorghum | extracellular | 43.79 | 39.78 |
| Zm00001d038450_P001 | Maize | vacuole | 41.42 | 39.77 |
| TraesCS1A01G298300.1 | Wheat | extracellular, vacuole | 41.42 | 39.55 |
| TraesCS3A01G347700.1 | Wheat | extracellular | 39.05 | 39.29 |
| TraesCS3D01G341300.1 | Wheat | extracellular | 38.46 | 39.16 |
| Zm00001d012480_P001 | Maize | extracellular | 40.24 | 39.08 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 41.42 | 36.27 |
| Os04t0630700-01 | Rice | cytosol | 18.34 | 28.7 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837208 | ProteinID:AAF82221.1 | ProteinID:AEE28062.1 | EMBL:AK117118 | ArrayExpress:AT1G06980 |
| EnsemblPlantsGene:AT1G06980 | RefSeq:AT1G06980 | TAIR:AT1G06980 | RefSeq:AT1G06980-TAIR-G | EnsemblPlants:AT1G06980.1 | TAIR:AT1G06980.1 |
| EMBL:AY088543 | EMBL:BT024871 | InterPro:DUF4228_plant | GO:GO:0008150 | RefSeq:NP_563773.1 | PFAM:PF14009 |
| PO:PO:0007616 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0025281 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF26 |
| UniProt:Q9LMJ2 | SignalP:SignalP-noTM | UniParc:UPI00000AC494 | SEG:seg | : | : |
Description
6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q9LMJ2]
Coordinates
chr1:-:2142939..2143977
Molecular Weight (calculated)
18943.9 Da
IEP (calculated)
9.388
GRAVY (calculated)
-0.516
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.