Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX90174 | Canola | cytosol, endoplasmic reticulum | 59.07 | 66.67 |
Bra030125.1-P | Field mustard | cytosol, extracellular | 60.1 | 65.54 |
CDX94651 | Canola | cytosol, extracellular | 60.1 | 65.54 |
CDY15646 | Canola | cytosol, extracellular | 59.59 | 64.97 |
Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 58.55 | 64.2 |
CDY43324 | Canola | cytosol, endoplasmic reticulum | 57.51 | 64.16 |
KRH11017 | Soybean | extracellular | 53.89 | 59.09 |
VIT_10s0003g01310.t01 | Wine grape | extracellular | 54.92 | 57.92 |
GSMUA_Achr4P08040_001 | Banana | extracellular | 50.26 | 57.4 |
KRH58967 | Soybean | cytosol, golgi | 51.81 | 57.14 |
KRH42866 | Soybean | extracellular, plasma membrane | 49.74 | 54.86 |
KRH21271 | Soybean | cytosol, nucleus, plastid | 54.92 | 54.36 |
Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 50.26 | 53.59 |
PGSC0003DMT400011206 | Potato | extracellular | 52.85 | 53.4 |
GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 45.6 | 53.33 |
Solyc02g076800.1.1 | Tomato | extracellular | 52.33 | 52.88 |
GSMUA_Achr6P22730_001 | Banana | cytosol | 44.04 | 51.52 |
HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 49.74 | 49.23 |
GSMUA_Achr7P25280_001 | Banana | extracellular | 44.04 | 48.85 |
TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 48.7 | 48.45 |
TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 47.15 | 47.89 |
TraesCS3D01G295400.1 | Wheat | extracellular | 46.63 | 47.37 |
Zm00001d043399_P001 | Maize | extracellular | 48.19 | 46.97 |
Os01t0758500-01 | Rice | cytosol | 46.63 | 46.15 |
EES03643 | Sorghum | endoplasmic reticulum, extracellular | 46.63 | 43.27 |
AT1G06980.1 | Thale cress | extracellular, golgi | 36.27 | 41.42 |
Zm00001d012700_P001 | Maize | extracellular | 44.56 | 40.0 |
AT2G30230.1 | Thale cress | extracellular | 36.27 | 39.55 |
Protein Annotations
MapMan:35.2 | EntrezGene:839794 | UniProt:A0A178WPC0 | ProteinID:AAF88119.1 | ProteinID:AEE31057.1 | ArrayExpress:AT1G29195 |
EnsemblPlantsGene:AT1G29195 | RefSeq:AT1G29195 | TAIR:AT1G29195 | RefSeq:AT1G29195-TAIR-G | EnsemblPlants:AT1G29195.1 | TAIR:AT1G29195.1 |
EMBL:AY052248 | EMBL:AY060513 | EMBL:AY087880 | InterPro:DUF4228_plant | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 |
RefSeq:NP_564323.1 | ProteinID:OAP19425.1 | PFAM:PF14009 | PO:PO:0000013 | PO:PO:0001054 | PO:PO:0001185 |
PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF3 | UniProt:Q9LP48 | UniParc:UPI00000A293B |
Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
Coordinates
chr1:-:10202414..10203491
Molecular Weight (calculated)
21647.0 Da
IEP (calculated)
9.031
GRAVY (calculated)
-0.675
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.