Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018045_P001 | |
| Zm00001d037221_P001 | |
| Zm00001d044836_P001 | |
| Zm00001d052256_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 74.75 | 77.89 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 76.26 | 77.84 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 74.24 | 77.37 |
| Os01t0758500-01 | Rice | cytosol | 71.72 | 72.82 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 70.2 | 71.28 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 50.51 | 60.61 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 50.51 | 59.17 |
| Zm00001d012700_P001 | Maize | extracellular | 61.62 | 56.74 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 44.95 | 53.94 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 46.46 | 53.18 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 48.48 | 52.46 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 45.96 | 52.3 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 44.95 | 52.05 |
| CDY15646 | Canola | cytosol, extracellular | 46.46 | 51.98 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 46.46 | 51.98 |
| KRH11017 | Soybean | extracellular | 45.45 | 51.14 |
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 45.45 | 51.14 |
| CDX94651 | Canola | cytosol, extracellular | 45.45 | 50.85 |
| KRH58967 | Soybean | cytosol, golgi | 43.94 | 49.71 |
| KRH42866 | Soybean | extracellular, plasma membrane | 43.43 | 49.14 |
| Solyc02g076800.1.1 | Tomato | extracellular | 46.97 | 48.69 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 46.97 | 48.19 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 46.46 | 47.18 |
| PGSC0003DMT400011206 | Potato | extracellular | 44.44 | 46.07 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 41.41 | 45.3 |
| Zm00001d009826_P001 | Maize | extracellular | 32.32 | 43.54 |
| Zm00001d028798_P001 | Maize | extracellular, vacuole | 31.31 | 38.51 |
| Zm00001d043024_P001 | Maize | extracellular | 31.82 | 37.06 |
| Zm00001d038450_P001 | Maize | vacuole | 31.31 | 35.23 |
| Zm00001d039735_P001 | Maize | extracellular | 31.31 | 34.64 |
| Zm00001d012480_P001 | Maize | extracellular | 29.8 | 33.91 |
Protein Annotations
| EMBL:EU970144 | EnsemblPlants:Zm00001d043399_P001 | EnsemblPlants:Zm00001d043399_T001 | EnsemblPlantsGene:Zm00001d043399 | EntrezGene:100277704 | InterPro:DUF4228_plant |
| PANTHER:PTHR33052 | PANTHER:PTHR33052:SF3 | PFAM:PF14009 | ProteinID:ONM37757.1 | SEG:seg | UniParc:UPI000182F8F8 |
| UniProt:B6TYS9 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:198729408..198730004
Molecular Weight (calculated)
21185.8 Da
IEP (calculated)
10.166
GRAVY (calculated)
-0.390
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: METIKCCIAC ILPCGALDVV RIVHSNGRVE EISGGPVLAG EIMKAYPKHV LRKPPSTCPA DGGIVVQKPV ILPHNAELQK GKIYFLMPVM ATPAPEKPAA
101: KPQPPPAAGQ SAAAASVARR RRRRKDHAAA RPDGGGAAPA CSSGAGARPP EGEKERLLAN ERYLSEIMKE KASTARDRRR GRVAVWRPHL ESITEDDL
101: KPQPPPAAGQ SAAAASVARR RRRRKDHAAA RPDGGGAAPA CSSGAGARPP EGEKERLLAN ERYLSEIMKE KASTARDRRR GRVAVWRPHL ESITEDDL
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.