Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os06t0226700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 75.38 | 75.38 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 71.79 | 73.68 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 72.31 | 72.68 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 70.77 | 72.63 |
| Zm00001d043399_P001 | Maize | extracellular | 72.82 | 71.72 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 67.18 | 62.98 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 50.77 | 60.0 |
| Zm00001d012700_P001 | Maize | extracellular | 64.62 | 58.6 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 50.26 | 57.99 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 45.64 | 53.94 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 46.67 | 53.22 |
| KRH42866 | Soybean | extracellular, plasma membrane | 47.69 | 53.14 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 49.23 | 52.46 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 46.15 | 52.02 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 47.18 | 51.98 |
| KRH11017 | Soybean | extracellular | 46.67 | 51.7 |
| KRH58967 | Soybean | cytosol, golgi | 45.64 | 50.86 |
| CDY15646 | Canola | cytosol, extracellular | 46.15 | 50.85 |
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 45.64 | 50.57 |
| CDX94651 | Canola | cytosol, extracellular | 45.13 | 49.72 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 44.1 | 49.43 |
| Solyc02g076800.1.1 | Tomato | extracellular | 47.69 | 48.69 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 47.18 | 47.18 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 46.15 | 46.63 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 42.56 | 45.86 |
| PGSC0003DMT400011206 | Potato | extracellular | 44.1 | 45.03 |
| Os05t0165200-00 | Rice | extracellular | 37.44 | 42.94 |
| Os01t0826800-01 | Rice | vacuole | 33.85 | 38.6 |
| Os03t0298100-00 | Rice | cytosol, extracellular | 34.87 | 38.2 |
| Os05t0474700-01 | Rice | extracellular | 32.31 | 36.84 |
| Os01t0165600-00 | Rice | extracellular, golgi, mitochondrion, nucleus | 29.23 | 33.53 |
| Os04t0630700-01 | Rice | cytosol | 13.33 | 24.07 |
Protein Annotations
| EnsemblPlants:Os01t0758500-01 | EnsemblPlantsGene:Os01g0758500 | EntrezGene:9271377 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF3 |
| PFAM:PF14009 | ProteinID:BAB90229.1 | ProteinID:BAS74432.1 | ProteinID:EAZ13602.1 | RefSeq:XP_015634962.1 | SEG:seg |
| UniParc:UPI00000A0E3F | UniProt:Q8S0I4 | MapMan:35.2 | : | : | : |
Description
Similar to predicted protein. (Os01t0758500-01);Conserved hypothetical protein. (Os01t0758500-02)
Coordinates
chr1:-:31889711..31891221
Molecular Weight (calculated)
21263.9 Da
IEP (calculated)
10.242
GRAVY (calculated)
-0.512
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTIRCCIAC ILPCGALDVV RIVHSNGRVE EISRPVLAGE IMKAYPKHVL RKPPSTCPAD GGGGGIVVQK PVILPPNAEL QKGKIYFLMP VMAPPEKEKE
101: KEKAKAAQAQ APAAARRRRR RKETADEAAG GRAASNAAAA PPTRVGSEGE KERLLANERY LSEIMKEKAS TARDRRRGRV AVWRPHLESI TEDDL
101: KEKAKAAQAQ APAAARRRRR RKETADEAAG GRAASNAAAA PPTRVGSEGE KERLLANERY LSEIMKEKAS TARDRRRGRV AVWRPHLESI TEDDL
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.