Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 94.22 | 92.61 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 79.19 | 80.12 |
| CDX94651 | Canola | cytosol, extracellular | 69.94 | 68.36 |
| CDY15646 | Canola | cytosol, extracellular | 69.36 | 67.8 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 64.16 | 57.51 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 60.69 | 57.38 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 54.91 | 56.21 |
| KRH11017 | Soybean | extracellular | 54.34 | 53.41 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 50.87 | 53.33 |
| KRH58967 | Soybean | cytosol, golgi | 53.18 | 52.57 |
| KRH42866 | Soybean | extracellular, plasma membrane | 52.6 | 52.0 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 49.13 | 51.52 |
| Solyc02g076800.1.1 | Tomato | extracellular | 55.49 | 50.26 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 54.91 | 50.0 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 54.91 | 48.97 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 53.76 | 48.95 |
| PGSC0003DMT400011206 | Potato | extracellular | 53.18 | 48.17 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 50.29 | 48.07 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 46.82 | 46.55 |
| Zm00001d043399_P001 | Maize | extracellular | 53.18 | 46.46 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 52.02 | 46.15 |
| Os01t0758500-01 | Rice | cytosol | 52.02 | 46.15 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 54.34 | 45.19 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 50.87 | 45.13 |
| CDY24020 | Canola | extracellular | 41.04 | 44.94 |
| CDX97836 | Canola | extracellular | 41.04 | 44.1 |
| CDY02050 | Canola | extracellular | 39.88 | 43.12 |
| CDY09944 | Canola | extracellular, golgi | 41.62 | 43.11 |
| CDX84851 | Canola | extracellular | 39.31 | 43.04 |
| CDX84850 | Canola | extracellular | 39.31 | 43.04 |
| CDY10237 | Canola | extracellular, golgi | 41.04 | 42.01 |
| CDX86506 | Canola | extracellular, golgi | 39.88 | 41.07 |
| Zm00001d012700_P001 | Maize | extracellular | 50.87 | 40.93 |
| CDY54890 | Canola | extracellular, golgi | 39.88 | 40.83 |
| CDY29687 | Canola | extracellular | 42.2 | 40.78 |
| CDY15595 | Canola | extracellular, golgi | 38.15 | 40.24 |
Protein Annotations
| EnsemblPlants:CDY43324 | EnsemblPlantsGene:GSBRNA2T00076373001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF26 | PFAM:PF14009 |
| ProteinID:CDY43324 | ProteinID:CDY43324.1 | UniParc:UPI0004EEF2CD | UniProt:A0A078I141 | MapMan:35.2 | : |
Description
BnaC03g58960DBnaC03g58960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I141]
Coordinates
chrLK032552:+:101580..102101
Molecular Weight (calculated)
19430.3 Da
IEP (calculated)
9.195
GRAVY (calculated)
-0.653
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETIRCCIA CILPCGALDV IRIIHSNGHV EEISGTITAG EVMKVYPKHV LKKPSSQSDH QERGDLISAT KIVIVPPEAE LQRGKIYFLV PAAKSDKRNA
101: KAVKKRSQTR RHGEEGDDNS NGDKDKSYDK DVSLLISDRY LTEILSEKIA TQKERRKGRV GVWRPHLESI NED
101: KAVKKRSQTR RHGEEGDDNS NGDKDKSYDK DVSLLISDRY LTEILSEKIA TQKERRKGRV GVWRPHLESI NED
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.