Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | KRH03466 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | KRH54542 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | KRH56919 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | KRH63357 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58967 | Soybean | cytosol, golgi | 74.86 | 74.86 |
| KRH11017 | Soybean | extracellular | 62.29 | 61.93 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 62.29 | 59.56 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 64.0 | 57.44 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 53.71 | 56.97 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 57.14 | 56.5 |
| CDX94651 | Canola | cytosol, extracellular | 57.14 | 56.5 |
| CDY15646 | Canola | cytosol, extracellular | 57.14 | 56.5 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 53.71 | 54.97 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 52.0 | 53.85 |
| Solyc02g076800.1.1 | Tomato | extracellular | 58.29 | 53.4 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 52.0 | 52.6 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 54.29 | 52.49 |
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 52.0 | 51.7 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 48.0 | 50.91 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 54.86 | 49.74 |
| PGSC0003DMT400011206 | Potato | extracellular | 53.14 | 48.69 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 53.71 | 48.21 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 52.0 | 47.89 |
| Os01t0758500-01 | Rice | cytosol | 53.14 | 47.69 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 46.86 | 47.13 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 52.0 | 46.91 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 50.86 | 46.84 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 52.0 | 43.75 |
| Zm00001d043399_P001 | Maize | extracellular | 49.14 | 43.43 |
| KRH30160 | Soybean | extracellular | 40.0 | 41.92 |
| KRH17122 | Soybean | extracellular, golgi | 40.0 | 41.92 |
| KRG98199 | Soybean | extracellular | 39.43 | 41.82 |
| Zm00001d012700_P001 | Maize | extracellular | 50.29 | 40.93 |
| KRH72764 | Soybean | extracellular | 38.86 | 39.77 |
Protein Annotations
| EMBL:ACUP02004833 | EnsemblPlants:KRH42866 | EnsemblPlantsGene:GLYMA_08G116200 | EntrezGene:100785552 | InterPro:DUF4228_plant | PANTHER:PTHR33052 |
| PANTHER:PTHR33052:SF3 | PFAM:PF14009 | ProteinID:KRH42866 | ProteinID:KRH42866.1 | SEG:seg | UniParc:UPI0001BA8E87 |
| UniProt:K7L641 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:8929349..8930869
Molecular Weight (calculated)
19697.0 Da
IEP (calculated)
10.509
GRAVY (calculated)
-0.581
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNCIRCCIS CIFPCGALDV IRIVHSNGRV EEISGTVKAS DVMKAHPKHV LKKPCSSPAD AAGISGGVHK IVVVPPDAEL QRGKIYFLMP LPPTPPTQEK
101: KNRQRKKKRK EHRERTMNNT NNASMITSMT SLLVSDRYLN DILSEKVSSQ RDRRRGRVAV WRPHLESIYE SPSDP
101: KNRQRKKKRK EHRERTMNNT NNASMITSMT SLLVSDRYLN DILSEKVSSQ RDRRRGRVAV WRPHLESIYE SPSDP
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [cytosol,endoplasmic reticulum]
SUBAcon: [cytosol,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.