Factsheet for Solyc03g006160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011206	Potato	extracellular	80.11	75.92
KRH11017	Soybean	extracellular	58.01	59.66
KRH58967	Soybean	cytosol, golgi	56.35	58.29
VIT_10s0003g01310.t01	Wine grape	extracellular	57.46	56.83
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	50.28	55.15
KRH42866	Soybean	extracellular, plasma membrane	52.49	54.29
KRH21271	Soybean	cytosol, nucleus, plastid	58.01	53.85
Solyc02g076800.1.1	Tomato	extracellular	55.25	52.36
GSMUA_Achr4P08040_001	Banana	extracellular	48.62	52.07
GSMUA_Achr6P22730_001	Banana	cytosol	46.41	50.91
CDX90174	Canola	cytosol, endoplasmic reticulum	47.51	50.29
CDY43324	Canola	cytosol, endoplasmic reticulum	48.07	50.29
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	53.59	50.26
Bra030125.1-P	Field mustard	cytosol, extracellular	48.62	49.72
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	48.07	49.43
CDY15646	Canola	cytosol, extracellular	48.07	49.15
CDX94651	Canola	cytosol, extracellular	48.07	49.15
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	46.96	44.74
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	46.96	43.81
TraesCS3D01G295400.1	Wheat	extracellular	45.86	43.68
GSMUA_Achr7P25280_001	Banana	extracellular	41.44	43.1
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	46.41	43.08
Os01t0758500-01	Rice	cytosol	45.86	42.56
Zm00001d043399_P001	Maize	extracellular	45.3	41.41
EES03643	Sorghum	endoplasmic reticulum, extracellular	47.51	41.35
Solyc06g007370.1.1	Tomato	extracellular	34.25	38.99
Zm00001d012700_P001	Maize	extracellular	43.09	36.28

Protein Annotations

EnsemblPlants:Solyc03g006160.1.1	EnsemblPlantsGene:Solyc03g006160.1	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF3	PFAM:PF14009
SEG:seg	UniParc:UPI00027677DD	UniProt:K4BE39	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:+:818015..818560

Molecular Weight (calculated)

20514.6 Da

IEP (calculated)

10.272

GRAVY (calculated)

-0.672

Length

181 amino acids

Sequence
(BLAST)

001: MRNAIRCFIS CILPCGSLDV IRIVHSNGKV EEISDSHIKA SQIMKLYPKH ILKKPSSSND DHQQNISTTT PKIVIVPPDA ELQRGKIYFL MPMPSSCSSS
101: SSSSTPREKL RTRSRLSTRN KKKTRQVTSE GHDNANLLIS DDQYLSDILS EKASTQRDKR RGRDRVWRPH LESISEIVSE L

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.