Factsheet for PGSC0003DMT400011206

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	75.92	80.11
KRH11017	Soybean	extracellular	54.45	59.09
VIT_10s0003g01310.t01	Wine grape	extracellular	55.5	57.92
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	49.74	57.58
KRH58967	Soybean	cytosol, golgi	51.83	56.57
CDX90174	Canola	cytosol, endoplasmic reticulum	48.69	54.39
GSMUA_Achr4P08040_001	Banana	extracellular	47.12	53.25
CDY43324	Canola	cytosol, endoplasmic reticulum	48.17	53.18
KRH42866	Soybean	extracellular, plasma membrane	48.69	53.14
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	53.4	52.85
KRH21271	Soybean	cytosol, nucleus, plastid	53.4	52.31
Bra030125.1-P	Field mustard	cytosol, extracellular	48.17	51.98
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	47.64	51.7
GSMUA_Achr6P22730_001	Banana	cytosol	44.5	51.52
CDY15646	Canola	cytosol, extracellular	47.64	51.41
CDX94651	Canola	cytosol, extracellular	47.64	51.41
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	46.6	46.84
TraesCS3D01G295400.1	Wheat	extracellular	45.55	45.79
Zm00001d043399_P001	Maize	extracellular	46.07	44.44
GSMUA_Achr7P25280_001	Banana	extracellular	40.31	44.25
Os01t0758500-01	Rice	cytosol	45.03	44.1
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	44.5	43.81
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	44.5	43.59
EES03643	Sorghum	endoplasmic reticulum, extracellular	46.07	42.31
PGSC0003DMT400052957	Potato	extracellular	35.6	41.21
Zm00001d012700_P001	Maize	extracellular	41.36	36.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400011206	EnsemblPlantsGene:PGSC0003DMG400004388	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF3	PFAM:PF14009
PGSC:PGSC0003DMG400004388	SEG:seg	UniParc:UPI0002951C0A	UniProt:M0ZZ72	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004388]

Coordinates

chr3:+:1562471..1563090

Molecular Weight (calculated)

21510.6 Da

IEP (calculated)

10.360

GRAVY (calculated)

-0.664

Length

191 amino acids

Sequence
(BLAST)

001: MRNAIRCFIS CILPCGALDV IRIVHSNGKV EEISDSHITA SQIMKLYPKH ILKKPTSSYS SSNDHQQNIS TTPKIVIVPP DAELQRGKIY FLMPMPSSCS
101: SSSSSSSSSS STPREKSRTR SRSSTRNKKK MRQVTSEGHK NEYNANLLIS NDEYLSDILS EKASTQRDKR RGRVRVWRPH LESISEIVSE L

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.