Factsheet for Solyc02g076800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01310.t01	Wine grape	extracellular	59.69	62.3
KRH58967	Soybean	cytosol, golgi	57.07	62.29
KRH11017	Soybean	extracellular	56.02	60.8
GSMUA_Achr4P08040_001	Banana	extracellular	52.88	59.76
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	51.31	59.39
KRH42866	Soybean	extracellular, plasma membrane	53.4	58.29
Bra030125.1-P	Field mustard	cytosol, extracellular	53.4	57.63
CDY15646	Canola	cytosol, extracellular	52.88	57.06
CDX94651	Canola	cytosol, extracellular	52.36	56.5
KRH21271	Soybean	cytosol, nucleus, plastid	57.59	56.41
CDY43324	Canola	cytosol, endoplasmic reticulum	50.26	55.49
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	52.36	55.25
GSMUA_Achr6P22730_001	Banana	cytosol	47.64	55.15
CDX90174	Canola	cytosol, endoplasmic reticulum	48.69	54.39
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	49.21	53.41
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	52.88	52.33
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	49.21	49.47
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	49.74	48.72
TraesCS3D01G295400.1	Wheat	extracellular	48.17	48.42
Os01t0758500-01	Rice	cytosol	48.69	47.69
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	48.17	47.42
Zm00001d043399_P001	Maize	extracellular	48.69	46.97
GSMUA_Achr7P25280_001	Banana	extracellular	42.41	46.55
EES03643	Sorghum	endoplasmic reticulum, extracellular	46.6	42.79
Solyc06g007370.1.1	Tomato	extracellular	35.6	42.77
Zm00001d012700_P001	Maize	extracellular	47.12	41.86

Protein Annotations

EnsemblPlants:Solyc02g076800.1.1	EnsemblPlantsGene:Solyc02g076800.1	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF3	PFAM:PF14009
SEG:seg	UniParc:UPI000276793C	UniProt:K4B8Q7	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:+:41913080..41913655

Molecular Weight (calculated)

20909.9 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.654

Length

191 amino acids

Sequence
(BLAST)

001: MKNTIRCCIS CILPCGALDV IRIVHANGKV EEISGSVKAA EIMKIYPKHV LKKPSSSYYS SEGGGVCPKI VVVPPDAELK RGKIYFLMPL PTPSSEKNRS
101: KSSTTTTRKK KTRSSSSSSS QGLRHDNGNS NNNNNNINGS SSSSNMMVSN DQYLSEILSE KVSTQRDRRR GRVGVWRPHL ESISEAANHE A

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.