CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15595	Canola	extracellular, golgi	77.38	79.27
CDY09944	Canola	extracellular, golgi	76.19	76.65
CDY54890	Canola	extracellular, golgi	73.81	73.37
CDY10237	Canola	extracellular, golgi	73.21	72.78
AT1G06980.1	Thale cress	extracellular, golgi	72.02	71.6
CDX97836	Canola	extracellular	65.48	68.32
CDY02050	Canola	extracellular	64.29	67.5
CDY24020	Canola	extracellular	61.31	65.19
CDX84850	Canola	extracellular	60.71	64.56
CDX84851	Canola	extracellular	60.71	64.56
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	56.55	64.19
CDY29687	Canola	extracellular	66.07	62.01
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	48.21	57.45
Zm00001d009826_P001	Maize	extracellular	49.4	56.46
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	48.81	56.16
KRH30160	Soybean	extracellular	55.36	55.69
KRH17122	Soybean	extracellular, golgi	54.76	55.09
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	45.24	54.68
KRG98199	Soybean	extracellular	53.57	54.55
Solyc06g007370.1.1	Tomato	extracellular	51.19	54.09
PGSC0003DMT400052957	Potato	extracellular	51.79	52.73
KRH72764	Soybean	extracellular	53.57	52.63
TraesCS1B01G131700.1	Wheat	extracellular	52.38	51.76
TraesCS1A01G111500.1	Wheat	extracellular	52.38	51.76
GSMUA_Achr11P...	Banana	cytosol, extracellular	44.05	51.75
TraesCS1D01G112900.1	Wheat	extracellular	51.79	51.18
GSMUA_Achr11P...	Banana	cytosol	50.0	50.6
EES17778	Sorghum	extracellular, golgi	50.6	49.42
Zm00001d028798_P001	Maize	extracellular, vacuole	47.02	49.07
EER95013	Sorghum	extracellular, vacuole	48.21	48.5
Os03t0298100-00	Rice	cytosol, extracellular	50.6	47.75
TraesCS4D01G190800.1	Wheat	extracellular	47.62	47.06
HORVU4Hr1G055090.1	Barley	extracellular	47.62	47.06
TraesCS4A01G114800.1	Wheat	extracellular	47.62	46.51
TraesCS4B01G189400.1	Wheat	extracellular, vacuole	47.02	46.47
Os05t0165200-00	Rice	extracellular	46.43	45.88
Os01t0165600-00	Rice	extracellular, golgi, mitochondrion, nucleus	46.43	45.88
GSMUA_Achr9P04640_001	Banana	extracellular	40.48	44.74
TraesCS3A01G098800.1	Wheat	extracellular	44.64	44.12
TraesCS3D01G099200.1	Wheat	extracellular	44.05	44.05
EES02407	Sorghum	extracellular, golgi, plasma membrane	48.21	44.02
Zm00001d039735_P001	Maize	extracellular	46.43	43.58
Os01t0826800-01	Rice	vacuole	43.45	42.69
TraesCS3B01G115000.1	Wheat	extracellular	42.86	42.6
CDX94651	Canola	cytosol, extracellular	44.64	42.37
CDY15646	Canola	cytosol, extracellular	42.86	40.68
TraesCS3D01G341300.1	Wheat	extracellular	39.88	40.36
EES03819	Sorghum	extracellular	42.26	40.11
CDY43324	Canola	cytosol, endoplasmic reticulum	41.07	39.88
Os05t0474700-01	Rice	extracellular	40.48	39.77
Zm00001d012480_P001	Maize	extracellular	41.07	39.66
CDX90174	Canola	cytosol, endoplasmic reticulum	39.88	39.18
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	41.07	38.98
TraesCS1A01G298300.1	Wheat	extracellular, vacuole	40.48	38.42
TraesCS1D01G292900.1	Wheat	extracellular	39.88	38.29
Zm00001d043024_P001	Maize	extracellular	38.69	38.24
EES18380	Sorghum	extracellular	42.26	38.17
TraesCS3B01G379600.1	Wheat	extracellular	36.9	38.04
TraesCS3A01G347700.1	Wheat	extracellular	37.5	37.5
Zm00001d038450_P001	Maize	vacuole	38.1	36.36
Os04t0630700-01	Rice	cytosol	19.64	30.56

Protein Annotations

EnsemblPlants:CDX86506	EnsemblPlantsGene:GSBRNA2T00145110001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26	PFAM:PF14009
ProteinID:CDX86506	ProteinID:CDX86506.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EDD717	MapMan:35.2

Description

BnaC08g01970D

Coordinates

chrLK031846:+:280392..281053

Molecular Weight (calculated)

18838.5 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.640

Length

168 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHI DEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSFPEKK RRRKDGHSPN
101: KTPNNNPNAD LRDVRDGDQC VKPCEKYLQE VVSSTSNGKE HRHRRRHSRS VSVSSWQPHL DSISEDLN

Best Arabidopsis Sequence Match ( AT1G06980.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q9LMJ2]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.