Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 5
  • golgi 5
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039735_P001 Maize extracellular 64.67 66.48
Os01t0165600-00 Rice extracellular, golgi, mitochondrion, nucleus 61.41 66.47
TraesCS3A01G098800.1 Wheat extracellular 57.07 61.76
TraesCS3B01G115000.1 Wheat extracellular 56.52 61.54
TraesCS3D01G099200.1 Wheat extracellular 55.98 61.31
GSMUA_Achr6P32750_001 Banana extracellular, vacuole 44.57 58.16
EES17778 Sorghum extracellular, golgi 53.8 57.56
GSMUA_Achr11P... Banana cytosol, extracellular 44.02 56.64
VIT_06s0004g07460.t01 Wine grape extracellular, golgi 44.02 54.73
GSMUA_Achr5P28030_001 Banana cytosol, extracellular 41.3 54.68
Os04t0630700-01 Rice cytosol 30.43 51.85
Bra031549.1-P Field mustard extracellular, golgi 45.11 49.7
Solyc06g007370.1.1 Tomato extracellular 42.93 49.69
Bra030668.1-P Field mustard extracellular, golgi 44.02 49.39
CDY02050 Canola extracellular 42.93 49.38
EER95013 Sorghum extracellular, vacuole 44.57 49.1
KRG98199 Soybean extracellular 44.02 49.09
CDY09944 Canola extracellular, golgi 44.02 48.5
KRH17122 Soybean extracellular, golgi 44.02 48.5
CDX86506 Canola extracellular, golgi 44.02 48.21
CDY24020 Canola extracellular 41.3 48.1
CDY10237 Canola extracellular, golgi 44.02 47.93
CDY54890 Canola extracellular, golgi 43.48 47.34
KRH30160 Soybean extracellular 42.93 47.31
PGSC0003DMT400052957 Potato extracellular 42.39 47.27
CDX97836 Canola extracellular 41.3 47.2
CDX84851 Canola extracellular 40.22 46.84
CDX84850 Canola extracellular 40.22 46.84
AT1G06980.1 Thale cress extracellular, golgi 42.93 46.75
CDY15595 Canola extracellular, golgi 41.3 46.34
KRH72764 Soybean extracellular 42.93 46.2
Bra018326.1-P Field mustard extracellular 44.57 46.07
GSMUA_Achr9P04640_001 Banana extracellular 36.96 44.74
Bra015540.1-P Field mustard extracellular, golgi 40.76 44.38
AT2G30230.1 Thale cress extracellular 42.39 44.07
CDY29687 Canola extracellular 42.39 43.58
Bra022784.1-P Field mustard extracellular 40.76 42.61
Bra021621.1-P Field mustard extracellular 41.3 42.46
EES03819 Sorghum extracellular 39.67 41.24
EES18380 Sorghum extracellular 40.76 40.32
EES03643 Sorghum endoplasmic reticulum, extracellular 36.41 32.21
Protein Annotations
EnsemblPlants:EES02407EnsemblPlantsGene:SORBI_3003G057600EntrezGene:8078509InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF30
PFAM:PF14009ProteinID:EES02407ProteinID:EES02407.1RefSeq:XP_002457287.1SEG:segSignalP:SignalP-noTM
unigene:Sbi.19626UniParc:UPI0001A850C2UniProt:C5XNK2MapMan:35.2::
Description
hypothetical protein
Coordinates
chr3:-:5100696..5101579
Molecular Weight (calculated)
19203.0 Da
IEP (calculated)
9.456
GRAVY (calculated)
-0.211
Length
184 amino acids
Sequence
(BLAST)
001: MGNSLRCCLA CVLPCGALDL VRIVHLSGRV DEYGRAVSAG EVLAAHPNHV LSRPCSSPQG VGVRRILIVS PDSELERGEI YFLIPAASVP DAKKAAAAGG
101: GGGGAATPTR HVRSKSEGSV VAAAAITITD RQLGGAESPP EKEAAKKKQQ QHKRAAAQQH RRRMSTGSHA APWQPHLACI AEDL
Best Arabidopsis Sequence Match ( AT2G30230.1 )
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN
Arabidopsis Description
6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.