CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73439
CDX78273
CDX90174
CDX94651
CDY15646
CDY27973
CDY36008
CDY43324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	CDX90174	AT1G29195.1	21798944
AT1G13320.1	CDX94651	AT1G29195.1	21798944
AT1G13320.1	CDY15646	AT1G29195.1	21798944
AT1G13320.1	CDY43324	AT1G29195.1	21798944
AT1G13320.1	CDY27973	AT3G08780.1	21798944
AT1G13320.1	CDY36008	AT3G08780.1	21798944
AT1G13320.1	CDX73439	AT3G54850.1	21798944
AT1G13320.1	CDX78273	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32720	Soybean	cytosol	20.52	88.78
PGSC0003DMT400041039	Potato	cytosol	56.37	82.08
CDY24397	Canola	cytosol	71.49	80.15
CDX84994	Canola	mitochondrion	20.3	78.99
CDY04181	Canola	endoplasmic reticulum	59.18	78.96
VIT_00s2496g00010.t01	Wine grape	cytosol	14.25	77.65
VIT_00s2436g00010.t01	Wine grape	cytosol	13.39	77.5
VIT_01s0011g00330.t01	Wine grape	cytosol	14.04	76.47
AT1G13320.1	Thale cress	cytosol	93.95	74.11
CDY13586	Canola	cytosol	95.03	73.95
CDY69424	Canola	cytosol	84.67	73.82
GSMUA_AchrUn_...	Banana	cytosol	38.01	72.73
PGSC0003DMT400033762	Potato	cytosol	90.28	71.21
Solyc05g009600.2.1	Tomato	plastid	90.28	71.21
Solyc04g007100.2.1	Tomato	cytosol	75.38	66.48
CDY51132	Canola	cytosol	84.02	66.38
CDY42101	Canola	cytosol	84.23	66.21
CDY36104	Canola	cytosol	84.02	66.16
CDX87453	Canola	cytosol	21.17	63.64
Solyc05g045950.1.1	Tomato	cytosol	22.89	59.55
CDY70440	Canola	cytosol	19.87	59.35
CDY03849	Canola	cytosol	67.6	59.17
CDY35849	Canola	plasma membrane	16.41	56.3
CDY31621	Canola	endoplasmic reticulum, extracellular	18.57	54.09
CDX70737	Canola	cytosol	13.17	51.26
CDX84995	Canola	cytosol	20.3	50.0
PGSC0003DMT400041034	Potato	cytosol	26.13	45.49
CDX84993	Canola	plasma membrane	31.97	35.07
CDY49184	Canola	mitochondrion	11.66	32.73
CDY24398	Canola	extracellular, vacuole	5.4	30.86
CDY66919	Canola	cytosol	11.02	13.6
CDY13585	Canola	cytosol, endoplasmic reticulum, golgi	12.31	13.29
CDY04182	Canola	cytosol	3.46	12.31
CDY24399	Canola	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	UniProt:A0A078HL27	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY39185	ProteinID:CDY39185	ProteinID:CDY39185.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00067388001	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PFAM:PF02985
PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	SUPFAM:SSF48371	UniParc:UPI0004EDBD32

Description

BnaC09g21590DBnaC09g21590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL27]

Coordinates

chrLK032442:+:300284..303753

Molecular Weight (calculated)

51615.1 Da

IEP (calculated)

5.190

GRAVY (calculated)

0.164

Length

463 amino acids

Sequence
(BLAST)

001: MRESDLVDHF LPLVKRLAAG EWFTARVSAC GVFHIAYPSA PDTLKTELRS IYSQLCSDDM PMVRRAAATN LGKFAATIGS AHLKTDIMPM FDDLTQDDQD
101: SVRLLSVEGC AALGKLLEPQ DCVAHILPVI VNFSQQDKSW RVRYMVANQL YELCEAVGPE PTRTELVPAY VRLLRDNEAE VRIAAAGKVT KFCRILNPEL
201: AIQHILPCVK ELSSDSSQHV RSALASVIMG MAPVLGKEAT IEHLLPIFLS LLKDEFPDVR LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL
301: AIIEYIPLLA SQLGVGFFDD KLGALCMQWL QDKVHSIRDA AANNLKRLAE EFGPEWAMQH IVPQVLEMIN NPHYLYRMTI LRAVSLLAPV MGSEITCSKL
401: LPVVITASKD RQVLTSLIPI VDQSVVENMI RPGLVELSED PDVDVRFFAN QALQSIDNVM MFS

Best Arabidopsis Sequence Match ( AT1G13320.1 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRVPNI KFNVAKMMQS LIPIVDQAVV ENMIRPCLVE LSEDPDVDVR YFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.