CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73439
CDX78273
CDX90174
CDX94651
CDY15646
CDY27973
CDY36008
CDY43324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	CDX90174	AT1G29195.1	21798944
AT1G13320.1	CDX94651	AT1G29195.1	21798944
AT1G13320.1	CDY15646	AT1G29195.1	21798944
AT1G13320.1	CDY43324	AT1G29195.1	21798944
AT1G13320.1	CDY27973	AT3G08780.1	21798944
AT1G13320.1	CDY36008	AT3G08780.1	21798944
AT1G13320.1	CDX73439	AT3G54850.1	21798944
AT1G13320.1	CDX78273	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32720	Soybean	cytosol	20.75	67.29
CDX87453	Canola	cytosol	29.11	65.58
PGSC0003DMT400041039	Potato	cytosol	59.65	65.09
CDY70440	Canola	cytosol	28.24	63.23
CDX84994	Canola	mitochondrion	21.04	61.34
Solyc05g045950.1.1	Tomato	cytosol	30.84	60.11
CDY24397	Canola	cytosol	70.89	59.56
CDY39185	Canola	cytosol	78.96	59.18
GSMUA_AchrUn_...	Banana	cytosol	40.63	58.26
CDY35849	Canola	plasma membrane	22.48	57.78
CDY31621	Canola	endoplasmic reticulum, extracellular	26.22	57.23
VIT_00s2496g00010.t01	Wine grape	cytosol	13.83	56.47
VIT_01s0011g00330.t01	Wine grape	cytosol	13.54	55.29
VIT_00s2436g00010.t01	Wine grape	cytosol	12.68	55.0
CDX84995	Canola	cytosol	29.39	54.26
CDX70737	Canola	cytosol	18.16	52.94
Bra017348.1-P	Field mustard	cytosol	37.75	50.58
Solyc04g007100.2.1	Tomato	cytosol	75.79	50.1
CDY13586	Canola	cytosol	82.13	47.9
AT1G13320.1	Thale cress	cytosol	80.98	47.87
PGSC0003DMT400033762	Potato	cytosol	78.39	46.34
Solyc05g009600.2.1	Tomato	plastid	78.1	46.17
CDY36104	Canola	cytosol	73.49	43.37
CDY51132	Canola	cytosol	73.2	43.34
CDY69424	Canola	cytosol	66.28	43.31
CDY42101	Canola	cytosol	73.49	43.29
CDY03849	Canola	cytosol	59.65	39.13
CDY49184	Canola	mitochondrion	14.12	29.7
CDX84993	Canola	plasma membrane	20.17	16.59
PGSC0003DMT400041034	Potato	cytosol	8.93	11.65
CDY66919	Canola	cytosol	10.66	9.87
CDY13585	Canola	cytosol, endoplasmic reticulum, golgi	10.09	8.16
CDY04182	Canola	cytosol	0.86	2.31
CDY24398	Canola	extracellular, vacuole	0.29	1.23
CDY24399	Canola	endoplasmic reticulum	0.0	0.0

Protein Annotations

EnsemblPlants:CDY04181	EnsemblPlantsGene:GSBRNA2T00117879001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFAM:PF02985	PFscan:PS50077	ProteinID:CDY04181	ProteinID:CDY04181.1
SUPFAM:SSF48371	UniParc:UPI0004EE0D3C	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:

Description

BnaA09g19590D

Coordinates

chrLK031949:-:1053198..1055693

Molecular Weight (calculated)

39239.7 Da

IEP (calculated)

7.290

GRAVY (calculated)

0.276

Length

347 amino acids

Sequence
(BLAST)

001: MILLKMIKIR LDYWQLGCAA LGKLLEPQDC VAHILPLIVN FSHQDKSWRV LYMLWDLNLL GKDLVPAYVR LLRDNEAEVR IAAAEKVTKF CRILNPELAI
101: QHILPSVKEL SSDSSQHIKS ALASVIMGMA PVLGKDATIE HLLPIFLSLL KDEFPDVCLN IISKLDQVNQ VIGIDLLSRS LLPAIVLASS TLCMQWLQDK
201: VHSIRDAAAN NLKRLAEEFG HEWAMQHIVP QFLEMIYNPH YLYRMTILRA VSLLAPVIGS EITCSKLLPV VITASKDRQY NKQGFFIYHR VPNIKFNVAK
301: VLQSLIPIVV ENMIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Best Arabidopsis Sequence Match ( AT1G13320.1 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRVPNI KFNVAKMMQS LIPIVDQAVV ENMIRPCLVE LSEDPDVDVR YFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.