Factsheet for Solyc04g007100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g076800.1.1
Solyc03g006160.1.1
Solyc09g015180.2.1
Solyc11g008390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	Solyc02g076800.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc03g006160.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT1G13320.1	Solyc11g008390.1.1	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041039	Potato	cytosol	53.52	88.36
KRH32720	Soybean	cytosol	16.38	80.37
Solyc05g045950.1.1	Tomato	cytosol	26.1	76.97
Bra017348.1-P	Field mustard	cytosol	37.9	76.83
Solyc05g009600.2.1	Tomato	plastid	85.9	76.83
CDY04181	Canola	endoplasmic reticulum	50.1	75.79
AT3G25800.3	Thale cress	cytosol	84.38	75.47
CDY39185	Canola	cytosol	66.48	75.38
CDY13586	Canola	cytosol	84.0	74.12
AT1G13320.1	Thale cress	cytosol	82.67	73.94
KRG90789	Soybean	endoplasmic reticulum, nucleus	82.29	73.85
KXG19189	Sorghum	cytosol	82.48	73.76
KRH35974	Soybean	endoplasmic reticulum, nucleus	82.1	73.68
CDY69424	Canola	cytosol	74.48	73.63
HORVU5Hr1G051850.3	Barley	cytosol	82.1	73.42
Zm00001d036031_P001	Maize	cytosol	82.1	73.42
TraesCS5A01G168400.5	Wheat	cytosol	82.1	73.42
TraesCS5B01G165200.3	Wheat	cytosol, golgi	82.1	73.42
TraesCS5D01G172700.4	Wheat	cytosol	82.1	73.42
Zm00001d045482_P001	Maize	cytosol	81.52	72.91
KRH70562	Soybean	endoplasmic reticulum	81.33	72.74
Solyc06g069180.2.1	Tomato	cytosol	80.0	72.29
KXG20320	Sorghum	cytosol	79.43	71.04
PGSC0003DMT400041034	Potato	cytosol	35.62	70.3
GSMUA_AchrUn_...	Banana	cytosol	32.19	69.83
Zm00001d046506_P002	Maize	cytosol	78.67	69.41
VIT_00s2496g00010.t01	Wine grape	cytosol	11.24	69.41
VIT_00s2436g00010.t01	Wine grape	cytosol	10.48	68.75
VIT_01s0011g00330.t01	Wine grape	cytosol	11.05	68.24
CDY04182	Canola	cytosol	16.76	67.69
Bra025162.1-P	Field mustard	cytosol	52.95	36.1
CDY49184	Canola	mitochondrion	10.1	32.12
Solyc03g121390.1.1	Tomato	cytosol	4.19	10.84

Protein Annotations

EnsemblPlants:Solyc04g007100.2.1	EnsemblPlantsGene:Solyc04g007100.2	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077	SUPFAM:SSF48371
UniParc:UPI00027667C7	UniProt:K4BNL7	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:

Description

No Description!

Coordinates

chr4:-:808715..822295

Molecular Weight (calculated)

58597.5 Da

IEP (calculated)

4.667

GRAVY (calculated)

0.168

Length

525 amino acids

Sequence
(BLAST)

001: MAHLLLYPMI LDELKNDDIQ LRLNSVRRLS SIACQLGEDR TRRELIPFLC RNTDDEDEVL LAMSEELGGF IPYVGGVEHA HVLLPLLGTL CTVEEICVRD
101: KAVESLCRIG SQMRESDLID WFVSLVKFAA TIEPAFLKTD IMTMFEDLTQ DDEDSVRLLA VEGCAALGKL LDPQDRVAHI LPVIVNFSQD KSWRVRYMVA
201: NQLYELCEAV GPETSRKDLV PSYVRLLRDN EAEVRIAAAG KATKFSQILS PELSLQHILP SVKELSSDSS QHVRSALASV IMGMAPVLGK DATIEHLLPI
301: FLSLLKDEFP DVRLNIISKL DQVNQVIGID LLSQSLLPAI VELAEDRHWR VRLAIIEYTP MLASQLGVGF FDDKLGTLCM QWLQDEVYSI RDAAANNLKR
401: LAEELGPEWA MQHIIPQVLG VINNSHYLYR MAILRAISLL APVMGSEITC SKLLPVVITV AKDRVPNVKF NVAKVLQSLI PVVDQSVAEK MIRSSLVELA
501: EDPDVDVRFY ASQALQSIDG VMMSS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.