CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90789	Soybean	endoplasmic reticulum, nucleus	98.8	98.8
KRH70562	Soybean	endoplasmic reticulum	93.16	92.84
Solyc05g009600.2.1	Tomato	plastid	91.28	90.97
PGSC0003DMT400033762	Potato	cytosol	91.11	90.8
KXG19189	Sorghum	cytosol	89.57	89.27
HORVU5Hr1G051850.3	Barley	cytosol	89.4	89.1
KRH48464	Soybean	endoplasmic reticulum	89.23	88.93
Zm00001d036031_P001	Maize	cytosol	89.23	88.93
TraesCS5D01G172700.4	Wheat	cytosol	89.23	88.93
TraesCS5A01G168400.5	Wheat	cytosol	89.23	88.93
TraesCS5B01G165200.3	Wheat	cytosol, golgi	89.23	88.93
KRH39213	Soybean	cytosol, endoplasmic reticulum	89.06	88.76
Zm00001d045482_P001	Maize	cytosol	89.06	88.76
KRH32720	Soybean	cytosol	16.07	87.85
KXG20320	Sorghum	cytosol	86.67	86.37
Zm00001d046506_P002	Maize	cytosol	85.64	84.2
Solyc04g007100.2.1	Tomato	cytosol	73.68	82.1
PGSC0003DMT400041039	Potato	cytosol	44.62	82.08
PGSC0003DMT400041034	Potato	cytosol	35.38	77.82
Solyc05g045950.1.1	Tomato	cytosol	18.46	60.67

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100819623	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	EMBL:ACUP02006715	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_10G275800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HEAT
InterPro:HEAT_type_2	UniProt:I1LEY1	InterPro:IPR011989	InterPro:IPR021133	EnsemblPlants:KRH35974	ProteinID:KRH35974
ProteinID:KRH35974.1	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
SUPFAM:SSF48371	UniParc:UPI000233D242	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:49838856..49844704

Molecular Weight (calculated)

65400.4 Da

IEP (calculated)

4.664

GRAVY (calculated)

0.090

Length

585 amino acids

Sequence
(BLAST)

001: MADEPLYPIA VLIDELKNDD IQLRLNSIRR LSTIARALGE ERTRRELIPF LSENNDDDDE VLLAMAEELG VFIPYVGGVE HASVLLPPLE TLCTVEETCV
101: RDKAAESLCR IGSQMRESDL VEYYIPLVKR LAAGEWFTAR VSACGLFHIA YPSAPETSKT ELRSIYSQLC QDDMPMVRRS AASNLGKFAA TVEYAHLKAD
201: LMSIFDDLTQ DDQDSVRLLA VEGCAALGKL LEPQDCVAHI LPVIVNFSQD KSWRVRYMVA NQLYELCEAV GPEPTRTELV PAYVRLLRDN EAEVRIAAAG
301: KVTKFCRILN PDLSIQHILS CVKELSSDSS QHVRSALASV IMGMAPVLGK EATIEQLLPI FLSLLKDEFP DVRLNIISKL DQVNQVIGID LLSQSLLPAI
401: VELAEDRHWR VRLAIIEYIP LLASQLGVSF FDDKLGALCM QWLQDKVHSI REAAANNLKR LAEEFGPEWA MQHIIPQVLE MNNNPHYLYR MTILRAISLL
501: APVMGPEITC SNLLPVVVAA SKDRVPNIKF NVAKVLESIF PIVDQSVVEK TIRPCLVELS EDPDVDVRFF SNQALQAIDH VMMSS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.