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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • golgi 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH35974 Soybean endoplasmic reticulum, nucleus 98.8 98.8
KRH70562 Soybean endoplasmic reticulum 93.16 92.84
Solyc05g009600.2.1 Tomato plastid 91.62 91.31
PGSC0003DMT400033762 Potato cytosol 91.45 91.14
KRH32720 Soybean cytosol 16.41 89.72
KRH48464 Soybean endoplasmic reticulum 89.74 89.44
HORVU5Hr1G051850.3 Barley cytosol 89.74 89.44
KXG19189 Sorghum cytosol 89.57 89.27
TraesCS5D01G172700.4 Wheat cytosol 89.57 89.27
TraesCS5A01G168400.5 Wheat cytosol 89.57 89.27
TraesCS5B01G165200.3 Wheat cytosol, golgi 89.57 89.27
KRH39213 Soybean cytosol, endoplasmic reticulum 89.4 89.1
Zm00001d036031_P001 Maize cytosol 89.23 88.93
Zm00001d045482_P001 Maize cytosol 89.06 88.76
KXG20320 Sorghum cytosol 87.01 86.71
Zm00001d046506_P002 Maize cytosol 85.98 84.54
Solyc04g007100.2.1 Tomato cytosol 73.85 82.29
PGSC0003DMT400041039 Potato cytosol 44.62 82.08
PGSC0003DMT400041034 Potato cytosol 35.56 78.2
Solyc05g045950.1.1 Tomato cytosol 18.46 60.67
Protein Annotations
Gene3D:1.25.10.10EntrezGene:100811658MapMan:13.4.1.2.4MapMan:18.4.24.1.2.1EMBL:ACUP02012641InterPro:ARM-like
InterPro:ARM-type_foldEnsemblPlantsGene:GLYMA_20G114000GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:HEAT
InterPro:HEAT_type_2UniProt:I1NFG9InterPro:IPR011989InterPro:IPR021133EnsemblPlants:KRG90789ProteinID:KRG90789
ProteinID:KRG90789.1PFAM:PF02985PFAM:PF13646PFscan:PS50077PANTHER:PTHR10648PANTHER:PTHR10648:SF20
SUPFAM:SSF48371UniParc:UPI000233DBDA::::
Description
hypothetical protein
Coordinates
chr20:-:35577406..35583346
Molecular Weight (calculated)
65507.7 Da
IEP (calculated)
4.700
GRAVY (calculated)
0.097
Length
585 amino acids
Sequence
(BLAST)
001: MADEPLYPIA VLIDELKNDD IQLRLNSIRR LSTIARALGE ERTRRELIPF LSENNDDDDE VLLAMAEELG VFIPYVGGVE HASVLLPPLE TLCTVEETCV
101: RDKAVESLCR IGSQMRESDL VEYYIPLVKR LAAGEWFTAR VSACGLFHIA YPSAPETSKT ELRSIYSQLC QDDMPMVRRS AASNLGKFAA TVEYAHLKAD
201: VMSIFDDLTQ DDQDSVRLLA VEGCAALGKL LEPQDCVAHI LPVIVNFSQD KSWRVRYMVA NQLYELCEAV GPEPTRTELV PAYVRLLRDN EAEVRIAAAG
301: KVTKFCRILN PDLAIQHILP CVKELSSDSS QHVRSALASV IMGMAPVLGK EATIEQLLPI FLSLLKDEFP DVRLNIISKL DQVNQVIGID LLSQSLLPAI
401: VELAEDRHWR VRLAIIEYIP LLASQLGVRF FDDKLGALCM QWLQDKVHSI REAAANNLKR LAEEFGPEWA MQHIIPQVLE MNNNPHYLYR MTILRAISLL
501: APVMGPEITC SNLLPVVLAA SKDRVPNIKF NVAKVLESIF PIVDQSVVEK TIRPCLVELS EDPDVDVRFF SNQALQAIDH VMMSC
Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)
001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS
Arabidopsis Description
PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.