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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G382300.1
TraesCS1B01G407600.1
TraesCS2A01G325500.1
TraesCS2B01G356400.1
TraesCS2D01G337200.1
TraesCS3A01G306500.1
TraesCS3B01G330000.1
TraesCS3D01G295400.1
TraesCS4A01G498700.1
TraesCS5A01G151000.1
TraesCS5B01G149500.1
TraesCS5D01G156000.1
TraesCS7A01G001900.1
TraesCS7D01G001600.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13320.1 TraesCS3A01G306500.1 AT1G29195.1 21798944
AT1G13320.1 TraesCS3B01G330000.1 AT1G29195.1 21798944
AT1G13320.1 TraesCS3D01G295400.1 AT1G29195.1 21798944
AT1G13320.1 TraesCS1A01G382300.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS1B01G407600.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS2A01G325500.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS2B01G356400.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS2D01G337200.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS5A01G151000.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS5B01G149500.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS5D01G156000.1 AT3G08780.1 21798944
AT1G13320.1 TraesCS4A01G498700.1 AT3G54850.1 21798944
AT1G13320.1 TraesCS7A01G001900.1 AT3G54850.1 21798944
AT1G13320.1 TraesCS7D01G001600.2 AT3G54850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G172700.4 Wheat cytosol 100.0 100.0
TraesCS5A01G168400.5 Wheat cytosol 100.0 100.0
HORVU5Hr1G051850.3 Barley cytosol 99.83 99.83
Zm00001d036031_P001 Maize cytosol 97.27 97.27
KXG19189 Sorghum cytosol 97.27 97.27
Zm00001d045482_P001 Maize cytosol 96.93 96.93
KXG20320 Sorghum cytosol 94.04 94.04
Zm00001d046506_P002 Maize cytosol 93.02 91.76
Solyc05g009600.2.1 Tomato plastid 89.78 89.78
AT3G25800.3 Thale cress cytosol 89.61 89.61
KRG90789 Soybean endoplasmic reticulum, nucleus 89.27 89.57
KRH35974 Soybean endoplasmic reticulum, nucleus 88.93 89.23
AT1G13320.1 Thale cress cytosol 87.73 87.73
KRH70562 Soybean endoplasmic reticulum 86.88 86.88
KRH32720 Soybean cytosol 15.67 85.98
Solyc04g007100.2.1 Tomato cytosol 73.42 82.1
Bra017348.1-P Field mustard cytosol 36.12 81.85
VIT_15s0045g00050.t01 Wine grape cytosol 24.7 80.56
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum 30.15 79.73
VIT_03s0038g00200.t01 Wine grape cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 19.42 79.72
VIT_00s0131g00290.t01 Wine grape cytosol 10.05 76.62
VIT_19s0027g00070.t01 Wine grape cytosol 10.05 76.62
VIT_00s0131g00270.t01 Wine grape cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 9.88 75.32
GSMUA_AchrUn_... Banana cytosol 32.54 73.18
VIT_04s0043g00200.t01 Wine grape mitochondrion 9.54 72.73
Solyc05g045950.1.1 Tomato cytosol 18.4 60.67
VIT_04s0008g07090.t01 Wine grape cytosol 8.52 55.56
CDX84993 Canola plasma membrane 38.84 54.03
PGSC0003DMT400044033 Potato mitochondrion 6.3 51.39
Bra025162.1-P Field mustard cytosol 57.92 44.16
Protein Annotations
EnsemblPlants:TraesCS5B01G165200.3EnsemblPlantsGene:TraesCS5B01G165200Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:ARM-likeInterPro:ARM-type_foldInterPro:HEATInterPro:HEAT_type_2InterPro:IPR011989InterPro:IPR021133
PANTHER:PTHR10648PANTHER:PTHR10648:SF20PFAM:PF02985PFAM:PF13646PFscan:PS50077SUPFAM:SSF48371
MapMan:13.4.1.2.4MapMan:18.4.24.1.2.1::::
Description
No Description!
Coordinates
chr5B:-:305591398..305597028
Molecular Weight (calculated)
65505.8 Da
IEP (calculated)
4.693
GRAVY (calculated)
0.108
Length
587 amino acids
Sequence
(BLAST)
001: MAMVDEPLYP IAVLIDELKN EDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDE DEVLLAMAEE LGVFIPYVGG VEHAHVLLPP LETLSTVEET
101: CVRDKAVESL CRIGAQMKEN DIVDYFIAVV KRLAAGEWFT ARVSSCGLFH IAYPSATDPL KTELRTIYGQ LCQDDMPMVR RAAASNLGKF AATVEQSHLK
201: TEIMSIFDDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRAD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LSPQLAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEQLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLEDKVF SIREAAANNL KRLAEEFGPE WAMQHIIPQV LEKINNPHYL YRMTILQAIS
501: LLAPVMGAEI TCQKLLPVVI NSSKDRVPNI KFNVAKVLQS LVPILDQSVA EKTVKPCLVE LSEDPDVDVR YYANQALQAC DQIMMSS
Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)
001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS
Arabidopsis Description
PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.