Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • cytosol 2
  • plastid 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:extracellular
 mitochondrion: 24351685
msms PMID: 24351685 doi
F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller
Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400041039 Potato cytosol 100.0 22.64
GSMUA_Achr3P06410_001 Banana cytosol 51.39 7.13
PGSC0003DMT400033762 Potato cytosol 56.94 6.98
PGSC0003DMT400010375 Potato cytosol 54.17 6.71
KXG19189 Sorghum cytosol 52.78 6.47
Zm00001d036031_P001 Maize cytosol 52.78 6.47
HORVU5Hr1G051850.3 Barley cytosol 51.39 6.3
TraesCS5A01G168400.5 Wheat cytosol 51.39 6.3
TraesCS5B01G165200.3 Wheat cytosol, golgi 51.39 6.3
TraesCS5D01G172700.4 Wheat cytosol 51.39 6.3
Zm00001d045482_P001 Maize cytosol 51.39 6.3
KXG20320 Sorghum cytosol 50.0 6.13
Zm00001d046506_P002 Maize cytosol 50.0 6.05
CDX84993 Canola plasma membrane 4.17 0.71
PGSC0003DMT400041034 Potato cytosol 0.0 0.0
VIT_04s0008g07090.t01 Wine grape cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400044033EnsemblPlantsGene:PGSC0003DMG400017088Gene3D:1.25.10.10InterPro:ARM-likeInterPro:HEAT_type_2InterPro:IPR011989
InterPro:IPR021133PANTHER:PTHR10648PANTHER:PTHR10648:SF20PFscan:PS50077PGSC:PGSC0003DMG400017088UniParc:UPI000294C45B
UniProt:M1BFI6MapMan:35.1::::
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017088]
Coordinates
chr4:-:940453..940888
Molecular Weight (calculated)
8003.1 Da
IEP (calculated)
6.431
GRAVY (calculated)
0.968
Length
72 amino acids
Sequence
(BLAST)
1: MGSEITCSKL LPVVITAAKD RVPNVKFNVA KVLQSLIPVV DQSVRTLIYL LFLDWLLGLV EITIELTYVV VC
Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)
001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS
Arabidopsis Description
PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.