Factsheet for PGSC0003DMT400041039

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011206
PGSC0003DMT400019235
PGSC0003DMT400044093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	PGSC0003DMT400011206	AT1G29195.1	21798944
AT1G13320.1	PGSC0003DMT400044093	AT3G08780.1	21798944
AT1G13320.1	PGSC0003DMT400019235	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044033	Potato	mitochondrion	22.64	100.0
KRH32720	Soybean	cytosol	26.1	77.57
VIT_00s2436g00010.t01	Wine grape	cytosol	15.41	61.25
CDY04181	Canola	endoplasmic reticulum	65.09	59.65
VIT_01s0011g00330.t01	Wine grape	cytosol	15.41	57.65
VIT_00s2496g00010.t01	Wine grape	cytosol	15.41	57.65
CDY39185	Canola	cytosol	82.08	56.37
Solyc05g045950.1.1	Tomato	cytosol	31.13	55.62
GSMUA_AchrUn_...	Banana	cytosol	40.88	53.72
Solyc04g007100.2.1	Tomato	cytosol	88.36	53.52
PGSC0003DMT400033762	Potato	cytosol	84.91	46.0
AT3G25800.3	Thale cress	cytosol	84.59	45.83
CDY69424	Canola	cytosol	76.42	45.76
PGSC0003DMT400010375	Potato	cytosol	82.7	45.27
CDY13586	Canola	cytosol	84.28	45.04
AT1G13320.1	Thale cress	cytosol	83.02	44.97
KRH35974	Soybean	endoplasmic reticulum, nucleus	82.08	44.62
KRG90789	Soybean	endoplasmic reticulum, nucleus	82.08	44.62
KRH70562	Soybean	endoplasmic reticulum	81.76	44.29
Bra017348.1-P	Field mustard	cytosol	27.36	33.59
CDY49184	Canola	mitochondrion	14.15	27.27
Bra025162.1-P	Field mustard	cytosol	48.43	20.0
PGSC0003DMT400041034	Potato	cytosol	2.2	2.63
CDY04182	Canola	cytosol	0.31	0.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400041039	EnsemblPlantsGene:PGSC0003DMG403015876	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
PFAM:PF13646	PFscan:PS50077	PGSC:PGSC0003DMG403015876	SUPFAM:SSF48371	UniParc:UPI0002957106	UniProt:M1BAT4
MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:	:	:

Description

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:PGSC_GENE;Acc:PGSC0003DMG403015876]

Coordinates

chr4:+:1257271..1266608

Molecular Weight (calculated)

35465.7 Da

IEP (calculated)

5.031

GRAVY (calculated)

0.397

Length

318 amino acids

Sequence
(BLAST)

001: MVANQLYELC EAVGPETSRT DLVPAYVRLL RDNEAEVRIA AAGKTTKFSQ ILSPELSIQH ILPCVKELSS DSSQHVRSAL ASVIMGMAPV LGKDATIEHL
101: LPIFLSLLKD EFPDVRLNII SKLDQVNQVI GIDLLSQSLL PAIVELAEDR HWRVRLAIIE YIPLLASQLG VGFFDDKLGT LCMQWLQDEV YSIRDAAANS
201: LKRLAEEFGP EWAMQHIIPQ VLDVINNSHY LYRMTILRAI SLLAPVMGSE ITCSKLLPVV ITAAKDRVPN VKFNVAKVLQ SLIPVVDQSV RTLIYLLFLD
301: WLLGLVEITI ELTYVVVC

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.