CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91959
KRH04403
KRH11017
KRH21271
KRH34817
KRH42866
KRH58967
KRH65583
KRH76029

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	KRH11017	AT1G29195.1	21798944
AT1G13320.1	KRH21271	AT1G29195.1	21798944
AT1G13320.1	KRH42866	AT1G29195.1	21798944
AT1G13320.1	KRH58967	AT1G29195.1	21798944
AT1G13320.1	KRH65583	AT3G08780.1	21798944
AT1G13320.1	KRH76029	AT3G08780.1	21798944
AT1G13320.1	KRG91959	AT3G54850.1	21798944
AT1G13320.1	KRH04403	AT3G54850.1	21798944
AT1G13320.1	KRH34817	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2436g00010.t01	Wine grape	cytosol	54.21	72.5
VIT_00s2496g00010.t01	Wine grape	cytosol	55.14	69.41
VIT_01s0011g00330.t01	Wine grape	cytosol	54.21	68.24
GSMUA_AchrUn_...	Banana	cytosol	84.11	37.19
PGSC0003DMT400041039	Potato	cytosol	77.57	26.1
CDY04181	Canola	endoplasmic reticulum	67.29	20.75
CDY39185	Canola	cytosol	88.78	20.52
CDY69424	Canola	cytosol	89.72	18.08
KRH39213	Soybean	cytosol, endoplasmic reticulum	93.46	17.04
KRH48464	Soybean	endoplasmic reticulum	93.46	17.04
KRG90789	Soybean	endoplasmic reticulum, nucleus	89.72	16.41
Solyc04g007100.2.1	Tomato	cytosol	80.37	16.38
KRH70562	Soybean	endoplasmic reticulum	88.78	16.18
CDY13586	Canola	cytosol	89.72	16.13
KRH35974	Soybean	endoplasmic reticulum, nucleus	87.85	16.07
AT3G25800.3	Thale cress	cytosol	86.92	15.84
AT1G13320.1	Thale cress	cytosol	85.98	15.67
HORVU5Hr1G051850.3	Barley	cytosol	85.98	15.67
PGSC0003DMT400033762	Potato	cytosol	85.98	15.67
Zm00001d045482_P001	Maize	cytosol	85.98	15.67
Solyc05g009600.2.1	Tomato	plastid	85.98	15.67
TraesCS5D01G172700.4	Wheat	cytosol	85.98	15.67
TraesCS5A01G168400.5	Wheat	cytosol	85.98	15.67
TraesCS5B01G165200.3	Wheat	cytosol, golgi	85.98	15.67
Zm00001d036031_P001	Maize	cytosol	85.05	15.5
KXG19189	Sorghum	cytosol	85.05	15.5
KXG20320	Sorghum	cytosol	82.24	14.99
Zm00001d046506_P002	Maize	cytosol	80.37	14.45
Bra025162.1-P	Field mustard	cytosol	88.78	12.34
CDY49184	Canola	mitochondrion	3.74	2.42
PGSC0003DMT400041034	Potato	cytosol	2.8	1.13
CDY04182	Canola	cytosol	0.93	0.77
Solyc05g045950.1.1	Tomato	cytosol	0.93	0.56

Protein Annotations

EMBL:ACUP02006154	EnsemblPlants:KRH32720	EnsemblPlantsGene:GLYMA_10G070400	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFscan:PS50077	ProteinID:KRH32720	ProteinID:KRH32720.1	SUPFAM:SSF48371	UniParc:UPI0006EDE5BB
UniProt:A0A0R0HQC5	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:7033937..7034610

Molecular Weight (calculated)

11829.5 Da

IEP (calculated)

8.071

GRAVY (calculated)

0.122

Length

107 amino acids

Sequence
(BLAST)

001: QDKSWRVRYM VANQLYELCE AVGPDPTRSE LVPAYVRLLR DNEAEVRIAV AGKVTKFSRI LNPDLAIQHI LPCVKELSTD SSHHVCSALA SVIMGMAPVL
101: GKVNITI

Best Arabidopsis Sequence Match ( AT1G13320.4 )
(BLAST)

001: MPMVRRAAAT NLGKFAATIE SAHLKTDIMS MFEDLTQDDQ DSVRLLAVEG CAALGKLLEP QDCVAHILPV IVNFSQDKSW RVRYMVANQL YELCEAVGPE
101: PTRTDLVPAY ARLLCDNEAE VRIAAAGKVT KFCRILNPEL AIQHILPCVK ELSSDSSQHV RSALASVIMG MAPVLGKDAT IEHLLPIFLS LLKDEFPDVR
201: LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL AIIEYIPLLA SQLGVGFFDE KLGALCMQWL QDKVHSIREA AANNLKRLAE EFGPEWAMQH
301: IVPQVLEMIN NPHYLYRMTI LRAVSLLAPV MGSEITCSKL LPAVITASKD RVPNIKFNVA KMMQSLIPIV DQAVVENMIR PCLVELSEDP DVDVRYFANQ
401: ALQSIDNVMM SS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.