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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH39213 Soybean cytosol, endoplasmic reticulum 98.3 98.3
KRH32720 Soybean cytosol 17.04 93.46
KRG90789 Soybean endoplasmic reticulum, nucleus 89.44 89.74
PGSC0003DMT400010375 Potato cytosol 88.42 89.33
KRH35974 Soybean endoplasmic reticulum, nucleus 88.93 89.23
Solyc06g069180.2.1 Tomato cytosol 88.25 89.16
KRH70562 Soybean endoplasmic reticulum 88.08 88.08
VIT_17s0000g03870.t01 Wine grape cytosol 93.87 85.83
Protein Annotations
Gene3D:1.25.10.10EntrezGene:100799440MapMan:13.4.1.2.4MapMan:18.4.24.1.2.1EMBL:ACUP02004239InterPro:ARM-like
InterPro:ARM-type_foldEnsemblPlantsGene:GLYMA_07G090200GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:HEAT
InterPro:HEAT_type_2UniProt:I1KIV5InterPro:IPR011989InterPro:IPR021133EnsemblPlants:KRH48464ProteinID:KRH48464
ProteinID:KRH48464.1PFAM:PF02985PFAM:PF13646PFscan:PS50077PANTHER:PTHR10648PANTHER:PTHR10648:SF20
SUPFAM:SSF48371UniParc:UPI000233864F::::
Description
hypothetical protein
Coordinates
chr7:-:8437635..8446446
Molecular Weight (calculated)
65322.4 Da
IEP (calculated)
4.679
GRAVY (calculated)
0.107
Length
587 amino acids
Sequence
(BLAST)
001: MAMVDQPLYP IAVLIDELKN EDIQLRLNSI RRLSTIARAL GEDRTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VDHANVLLPP LETLCTVEET
101: CVRDKSVESL CRIGAQMREQ DLVEHFIPLV KRLAAGEWFT ARVSSCGLFH IAYPSAPESV KTELRAIYGQ LCQDDMPMVR RSAATNLGKF AATVEAPHLK
201: SDIMSVFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDPTRSE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFSRI LNPDLAIQHI LPCVKELSTD SSQHVRSALA SVIMGMAPVL GKDATIEQLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLKDKVY SIRDAAANNI KRLAEEFGPD WAMQHIIPQV LDMVTDPHYL YRMTILQAIS
501: LLAPVLGSEI TSSKLLPLVI NASKDRVPNI KFNVAKVLQS LIPIVDQSVV ESTIRPCLVE LSEDPDVDVR FFASQALQSS DQVKMSS
Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)
001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS
Arabidopsis Description
PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.