Factsheet for Solyc05g009600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g076800.1.1
Solyc03g006160.1.1
Solyc09g015180.2.1
Solyc11g008390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	Solyc02g076800.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc03g006160.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT1G13320.1	Solyc11g008390.1.1	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033762	Potato	cytosol	99.66	99.66
AT3G25800.3	Thale cress	cytosol	92.84	92.84
KRG90789	Soybean	endoplasmic reticulum, nucleus	91.31	91.62
KRH35974	Soybean	endoplasmic reticulum, nucleus	90.97	91.28
CDY69424	Canola	cytosol	82.11	90.77
CDY13586	Canola	cytosol	91.65	90.42
CDY39185	Canola	cytosol	71.21	90.28
KXG19189	Sorghum	cytosol	90.12	90.12
HORVU5Hr1G051850.3	Barley	cytosol	89.95	89.95
TraesCS5D01G172700.4	Wheat	cytosol	89.78	89.78
TraesCS5B01G165200.3	Wheat	cytosol, golgi	89.78	89.78
TraesCS5A01G168400.5	Wheat	cytosol	89.78	89.78
Zm00001d036031_P001	Maize	cytosol	89.61	89.61
AT1G13320.1	Thale cress	cytosol	89.44	89.44
Zm00001d045482_P001	Maize	cytosol	89.27	89.27
Solyc06g069180.2.1	Tomato	cytosol	88.08	88.98
KRH70562	Soybean	endoplasmic reticulum	88.93	88.93
KXG20320	Sorghum	cytosol	87.39	87.39
Bra017348.1-P	Field mustard	cytosol	38.33	86.87
CDY04182	Canola	cytosol	19.08	86.15
KRH32720	Soybean	cytosol	15.67	85.98
Solyc04g007100.2.1	Tomato	cytosol	76.83	85.9
Zm00001d046506_P002	Maize	cytosol	86.37	85.21
CDY04181	Canola	endoplasmic reticulum	46.17	78.1
VIT_00s2436g00010.t01	Wine grape	cytosol	10.56	77.5
VIT_00s2496g00010.t01	Wine grape	cytosol	11.07	76.47
VIT_01s0011g00330.t01	Wine grape	cytosol	10.9	75.29
GSMUA_AchrUn_...	Banana	cytosol	30.15	73.14
Solyc05g045950.1.1	Tomato	cytosol	19.76	65.17
Bra025162.1-P	Field mustard	cytosol	60.65	46.23
CDY49184	Canola	mitochondrion	10.05	35.76
Solyc03g121390.1.1	Tomato	cytosol	7.84	22.66

Protein Annotations

Gene3D:1.25.10.10	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0006464	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009723	GO:GO:0009789	GO:GO:0009926
GO:GO:0009987	GO:GO:0010119	GO:GO:0016020	GO:GO:0019538	GO:GO:0030312	GO:GO:0035304
InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	UniProt:K4BXD4	PFAM:PF02985
PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc05g009600.2
EnsemblPlants:Solyc05g009600.2.1	UniParc:UPI0002766C4F	:	:	:	:

Description

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:Projected from Arabidopsis thaliana (AT1G25490) UniProtKB/Swiss-Prot;Acc:Q38845]

Coordinates

chr5:+:3800023..3807291

Molecular Weight (calculated)

65478.8 Da

IEP (calculated)

4.683

GRAVY (calculated)

0.139

Length

587 amino acids

Sequence
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEHAHVLLPP LETLCTVEET
101: CVRDKAVESL CRIGSQMRES DLVDWFVPLV KRLAAGEWFT ARVSACGLFH IAYSSAPEML KAELRSIYSQ LCQDDMPMVR RSAATNLGKF AATVESAYLK
201: SDIMSIFDDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LSPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIRDAAANNL KRLAEEFGPE WAMQHIIPQV LDMTTSPHYL YRMTILRSIS
501: LLAPVMGSEI TCSKLLPVVV TATKDRVPNI KFNVAKVLQS LVPIVDNSVV EKTIRPSLVE LAEDPDVDVR FYANQALQSI DNVMMSG

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.