Factsheet for Solyc05g045950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g076800.1.1
Solyc03g006160.1.1
Solyc09g015180.2.1
Solyc11g008390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	Solyc02g076800.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc03g006160.1.1	AT1G29195.1	21798944
AT1G13320.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT1G13320.1	Solyc11g008390.1.1	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041039	Potato	cytosol	55.62	31.13
CDY04181	Canola	endoplasmic reticulum	60.11	30.84
CDY49184	Canola	mitochondrion	24.72	26.67
Solyc04g007100.2.1	Tomato	cytosol	76.97	26.1
CDY39185	Canola	cytosol	59.55	22.89
Bra017348.1-P	Field mustard	cytosol	29.78	20.46
Solyc05g009600.2.1	Tomato	plastid	65.17	19.76
AT3G25800.3	Thale cress	cytosol	64.61	19.59
CDY13586	Canola	cytosol	63.48	18.99
AT1G13320.1	Thale cress	cytosol	61.8	18.74
KRG90789	Soybean	endoplasmic reticulum, nucleus	60.67	18.46
KRH35974	Soybean	endoplasmic reticulum, nucleus	60.67	18.46
KXG19189	Sorghum	cytosol	60.67	18.4
TraesCS5D01G172700.4	Wheat	cytosol	60.67	18.4
TraesCS5B01G165200.3	Wheat	cytosol, golgi	60.67	18.4
TraesCS5A01G168400.5	Wheat	cytosol	60.67	18.4
HORVU5Hr1G051850.3	Barley	cytosol	60.67	18.4
KRH70562	Soybean	endoplasmic reticulum	60.11	18.23
Zm00001d036031_P001	Maize	cytosol	60.11	18.23
Zm00001d045482_P001	Maize	cytosol	59.55	18.06
Solyc06g069180.2.1	Tomato	cytosol	57.3	17.56
KXG20320	Sorghum	cytosol	57.3	17.38
Zm00001d046506_P002	Maize	cytosol	56.18	16.81
CDY69424	Canola	cytosol	35.96	12.05
GSMUA_AchrUn_...	Banana	cytosol	7.87	5.79
Bra025162.1-P	Field mustard	cytosol	17.42	4.03
Solyc03g121390.1.1	Tomato	cytosol	4.49	3.94
VIT_00s2436g00010.t01	Wine grape	cytosol	1.12	2.5
VIT_00s2496g00010.t01	Wine grape	cytosol	1.12	2.35
VIT_01s0011g00330.t01	Wine grape	cytosol	1.12	2.35
KRH32720	Soybean	cytosol	0.56	0.93
CDY04182	Canola	cytosol	0.0	0.0
PGSC0003DMT400041034	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g045950.1.1	EnsemblPlantsGene:Solyc05g045950.1	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
PFscan:PS50077	SUPFAM:SSF48371	UniParc:UPI00027668E5	UniProt:K4C0S8	MapMan:35.1	:

Description

No Description!

Coordinates

chr5:+:57783720..57785044

Molecular Weight (calculated)

19865.6 Da

IEP (calculated)

9.671

GRAVY (calculated)

0.118

Length

178 amino acids

Sequence
(BLAST)

001: MLVYSIRDTA ANNLKRLAEE LGPEWAMQHI IPQVLGVINN SHYLYRMTIL RAISLLAPVM GSEITCSKLL PVVITVAKDR VPNVKFNVAK VLQSLIPVVD
101: QSVAEKMIRS SLVELAEDPD VDVRFYASQA LQSIDGVMMS SYRYLSVGGS IPEICCQILS GRLGLRRHTK KQLREGRK

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.