Factsheet for GSMUA_AchrUn_randomP22320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P24290_001
GSMUA_Achr3P00280_001
GSMUA_Achr4P08040_001
GSMUA_Achr6P22730_001
GSMUA_Achr6P26830_001
GSMUA_Achr7P25280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	GSMUA_Achr4P08040_001	AT1G29195.1	21798944
AT1G13320.1	GSMUA_Achr6P22730_001	AT1G29195.1	21798944
AT1G13320.1	GSMUA_Achr6P26830_001	AT1G29195.1	21798944
AT1G13320.1	GSMUA_Achr7P25280_001	AT1G29195.1	21798944
AT1G13320.1	GSMUA_Achr1P24290_001	AT3G54850.1	21798944
AT1G13320.1	GSMUA_Achr3P00280_001	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32720	Soybean	cytosol	37.19	84.11
VIT_00s2496g00010.t01	Wine grape	cytosol	26.45	75.29
VIT_00s2436g00010.t01	Wine grape	cytosol	24.79	75.0
VIT_01s0011g00330.t01	Wine grape	cytosol	26.03	74.12
PGSC0003DMT400041039	Potato	cytosol	53.72	40.88
CDY04181	Canola	endoplasmic reticulum	58.26	40.63
CDY39185	Canola	cytosol	72.73	38.01
GSMUA_Achr3P06410_001	Banana	cytosol	74.79	34.87
CDY69424	Canola	cytosol	71.49	32.58
Solyc04g007100.2.1	Tomato	cytosol	69.83	32.19
AT1G13320.1	Thale cress	cytosol	73.55	30.32
PGSC0003DMT400033762	Potato	cytosol	73.55	30.32
AT3G25800.3	Thale cress	cytosol	73.14	30.15
Solyc05g009600.2.1	Tomato	plastid	73.14	30.15
CDY13586	Canola	cytosol	73.55	29.92
GSMUA_Achr4P13030_001	Banana	cytosol	71.9	29.64
GSMUA_Achr8P25340_001	Banana	cytosol	71.49	29.47
GSMUA_Achr4P09250_001	Banana	cytosol	71.07	29.3
Bra025162.1-P	Field mustard	cytosol	69.83	21.95
PGSC0003DMT400041034	Potato	cytosol	15.7	14.29
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum	8.26	9.01
Solyc05g045950.1.1	Tomato	cytosol	5.79	7.87
CDY49184	Canola	mitochondrion	2.89	4.24
GSMUA_AchrUn_...	Banana	cytosol	1.24	1.15
CDY04182	Canola	cytosol	0.41	0.77

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP22320_001	EnsemblPlants:GSMUA_AchrUn_randomT22320_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG22320_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989
InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFAM:PF02985	PFscan:PS50077	SUPFAM:SSF48371
UniParc:UPI0002957711	UniProt:M0UBE0	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:

Description

Putative Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22320_001]

Coordinates

chrchrUn_random:-:108894366..108896401

Molecular Weight (calculated)

27139.0 Da

IEP (calculated)

5.636

GRAVY (calculated)

0.133

Length

242 amino acids

Sequence
(BLAST)

001: MSDQDSVRLL AVEGCAALGN LLEPQDCASH ILPVIVNFSQ DKSWRVRYMV ANQLYELCEA VGPEPTSSDL MPAYVRLLRD NEAEVRIAAA GKVTKFCRIL
101: NPHLAVQHIV PCVKELSSDS SQHVRSALAS VIMGMAPVLG KDATIEQLLP IFLSLLKDEF PDVRLNIISK LDQVNQVCQC LGFHGFFLVP YIYPELSVFV
201: GSYEKFRQNR VSQDDINSLF TANMFQNKEK NNIFIFGYIP II

Best Arabidopsis Sequence Match ( AT1G13320.2 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRQFQT SNLTWPK

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.