Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0058g00530.t01 | |
| VIT_10s0003g01310.t01 | |
| VIT_13s0019g04710.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13320.1 | VIT_10s0003g01310.t01 | AT1G29195.1 | 21798944 |
| AT1G13320.1 | VIT_08s0058g00530.t01 | AT3G08780.1 | 21798944 |
| AT1G13320.1 | VIT_13s0019g04710.t01 | AT3G54850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2436g00010.t01 | Wine grape | cytosol | 94.12 | 100.0 |
| VIT_01s0011g00330.t01 | Wine grape | cytosol | 98.82 | 98.82 |
| KRH32720 | Soybean | cytosol | 69.41 | 55.14 |
| VIT_03s0038g00200.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 88.24 | 52.45 |
| VIT_15s0045g00050.t01 | Wine grape | cytosol | 77.65 | 36.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 75.29 | 26.45 |
| PGSC0003DMT400041039 | Potato | cytosol | 57.65 | 15.41 |
| CDY39185 | Canola | cytosol | 77.65 | 14.25 |
| CDY04181 | Canola | endoplasmic reticulum | 56.47 | 13.83 |
| CDY69424 | Canola | cytosol | 77.65 | 12.43 |
| AT1G13320.1 | Thale cress | cytosol | 77.65 | 11.24 |
| Solyc04g007100.2.1 | Tomato | cytosol | 69.41 | 11.24 |
| CDY13586 | Canola | cytosol | 77.65 | 11.09 |
| PGSC0003DMT400033762 | Potato | cytosol | 76.47 | 11.07 |
| Solyc05g009600.2.1 | Tomato | plastid | 76.47 | 11.07 |
| AT3G25800.3 | Thale cress | cytosol | 75.29 | 10.9 |
| VIT_17s0000g03870.t01 | Wine grape | cytosol | 80.0 | 10.59 |
| VIT_01s0011g03280.t01 | Wine grape | cytosol | 71.76 | 10.39 |
| Bra025162.1-P | Field mustard | cytosol | 75.29 | 8.31 |
| CDY49184 | Canola | mitochondrion | 4.71 | 2.42 |
| PGSC0003DMT400041034 | Potato | cytosol | 7.06 | 2.26 |
| VIT_00s0131g00270.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 1.18 | 1.3 |
| VIT_00s0131g00290.t01 | Wine grape | cytosol | 1.18 | 1.3 |
| VIT_04s0043g00200.t01 | Wine grape | mitochondrion | 1.18 | 1.3 |
| VIT_19s0027g00070.t01 | Wine grape | cytosol | 1.18 | 1.3 |
| Solyc05g045950.1.1 | Tomato | cytosol | 2.35 | 1.12 |
| VIT_04s0008g07090.t01 | Wine grape | cytosol | 1.18 | 1.11 |
| CDY04182 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | ProteinID:CCB50221 | ProteinID:CCB50221.1 |
| ProteinID:CCB59198 | ProteinID:CCB59198.1 | UniProt:F6HWY4 | EMBL:FN595633 | EMBL:FN596392 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:HEAT | InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 |
| PFAM:PF02985 | PFscan:PS50077 | PANTHER:PTHR10648 | PANTHER:PTHR10648:SF20 | SUPFAM:SSF48371 | UniParc:UPI000210A4B4 |
| ArrayExpress:VIT_00s2496g00010 | EnsemblPlantsGene:VIT_00s2496g00010 | EnsemblPlants:VIT_00s2496g00010.t01 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:42172197..42172624
Molecular Weight (calculated)
9811.9 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.160
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MNFSQDKSWR VRYMVANQLY ELCEVVGPEP TRSDLVPAYV RLLHDNEAEV RITAAGKVTK FCWILNPKLA IPPYPSHVSS IFQKF
001: MPMVRRAAAT NLGKFAATIE SAHLKTDIMS MFEDLTQDDQ DSVRLLAVEG CAALGKLLEP QDCVAHILPV IVNFSQDKSW RVRYMVANQL YELCEAVGPE
101: PTRTDLVPAY ARLLCDNEAE VRIAAAGKVT KFCRILNPEL AIQHILPCVK ELSSDSSQHV RSALASVIMG MAPVLGKDAT IEHLLPIFLS LLKDEFPDVR
201: LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL AIIEYIPLLA SQLGVGFFDE KLGALCMQWL QDKVHSIREA AANNLKRLAE EFGPEWAMQH
301: IVPQVLEMIN NPHYLYRMTI LRAVSLLAPV MGSEITCSKL LPAVITASKD RVPNIKFNVA KMMQSLIPIV DQAVVENMIR PCLVELSEDP DVDVRYFANQ
401: ALQSIDNVMM SS
101: PTRTDLVPAY ARLLCDNEAE VRIAAAGKVT KFCRILNPEL AIQHILPCVK ELSSDSSQHV RSALASVIMG MAPVLGKDAT IEHLLPIFLS LLKDEFPDVR
201: LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL AIIEYIPLLA SQLGVGFFDE KLGALCMQWL QDKVHSIREA AANNLKRLAE EFGPEWAMQH
301: IVPQVLEMIN NPHYLYRMTI LRAVSLLAPV MGSEITCSKL LPAVITASKD RVPNIKFNVA KMMQSLIPIV DQAVVENMIR PCLVELSEDP DVDVRYFANQ
401: ALQSIDNVMM SS
Arabidopsis Description
PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.