Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400011206 | |
| PGSC0003DMT400019235 | |
| PGSC0003DMT400044093 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13320.1 | PGSC0003DMT400011206 | AT1G29195.1 | 21798944 |
| AT1G13320.1 | PGSC0003DMT400044093 | AT3G08780.1 | 21798944 |
| AT1G13320.1 | PGSC0003DMT400019235 | AT3G54850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04182 | Canola | cytosol | 33.46 | 68.46 |
| CDY69424 | Canola | cytosol | 76.69 | 38.42 |
| PGSC0003DMT400033762 | Potato | cytosol | 81.2 | 36.8 |
| Solyc04g007100.2.1 | Tomato | cytosol | 70.3 | 35.62 |
| KRG90789 | Soybean | endoplasmic reticulum, nucleus | 78.2 | 35.56 |
| KRH35974 | Soybean | endoplasmic reticulum, nucleus | 77.82 | 35.38 |
| Bra017348.1-P | Field mustard | cytosol | 34.21 | 35.14 |
| AT3G25800.3 | Thale cress | cytosol | 77.44 | 35.09 |
| CDY13586 | Canola | cytosol | 77.07 | 34.45 |
| PGSC0003DMT400010375 | Potato | cytosol | 75.19 | 34.42 |
| AT1G13320.1 | Thale cress | cytosol | 75.94 | 34.41 |
| KRH70562 | Soybean | endoplasmic reticulum | 75.56 | 34.24 |
| CDY39185 | Canola | cytosol | 45.49 | 26.13 |
| Bra025162.1-P | Field mustard | cytosol | 64.66 | 22.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 14.29 | 15.7 |
| CDY04181 | Canola | endoplasmic reticulum | 11.65 | 8.93 |
| VIT_00s2496g00010.t01 | Wine grape | cytosol | 2.26 | 7.06 |
| VIT_01s0011g00330.t01 | Wine grape | cytosol | 2.26 | 7.06 |
| CDY49184 | Canola | mitochondrion | 3.01 | 4.85 |
| KRH32720 | Soybean | cytosol | 1.13 | 2.8 |
| VIT_00s2436g00010.t01 | Wine grape | cytosol | 0.75 | 2.5 |
| PGSC0003DMT400041039 | Potato | cytosol | 2.63 | 2.2 |
| PGSC0003DMT400044033 | Potato | mitochondrion | 0.0 | 0.0 |
| Solyc05g045950.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400041034 | EnsemblPlantsGene:PGSC0003DMG402015876 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:HEAT_type_2 | InterPro:IPR011989 | InterPro:IPR021133 | PANTHER:PTHR10648 | PANTHER:PTHR10648:SF20 |
| PFscan:PS50077 | PGSC:PGSC0003DMG402015876 | SUPFAM:SSF48371 | UniParc:UPI000294CCCD | UniProt:M1BAT3 | MapMan:13.4.1.2.4 |
| MapMan:18.4.24.1.2.1 | : | : | : | : | : |
Description
Serine/threonine protein phosphatase 2a regulatory subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG402015876]
Coordinates
chr4:+:1252304..1256488
Molecular Weight (calculated)
29727.0 Da
IEP (calculated)
4.464
GRAVY (calculated)
0.052
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHLLLYPMV LDELKNDDIQ LRLNSIRRLS SIACQLGEDR TRRELIPFLC RNTDDEDEVL LAMSEELGGF IPYVGGVEHA HVLLPLLGTL CTVEEICVRD
101: KAVESLCRIG SQMRESDLID RFVSLVKRLA AGEWFTARVS ACGLFHIAYP SSPEMLKAEL RSIYSQLSQD DMPMVRRSAA ANLGKFAATI EPAYLKTDIM
201: TMFEDLTQDD QDSVRLVVVE GCAALGKLLD PQDCVAHILP VIVNFSQVGR TEIEEEQDRL NSILGL
101: KAVESLCRIG SQMRESDLID RFVSLVKRLA AGEWFTARVS ACGLFHIAYP SSPEMLKAEL RSIYSQLSQD DMPMVRRSAA ANLGKFAATI EPAYLKTDIM
201: TMFEDLTQDD QDSVRLVVVE GCAALGKLLD PQDCVAHILP VIVNFSQVGR TEIEEEQDRL NSILGL
001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRQFQT SNSTSLKYFN PSFQ
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRQFQT SNSTSLKYFN PSFQ
Arabidopsis Description
PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.