CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73439
CDX78273
CDX90174
CDX94651
CDY15646
CDY27973
CDY36008
CDY43324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	CDX90174	AT1G29195.1	21798944
AT1G13320.1	CDX94651	AT1G29195.1	21798944
AT1G13320.1	CDY15646	AT1G29195.1	21798944
AT1G13320.1	CDY43324	AT1G29195.1	21798944
AT1G13320.1	CDY27973	AT3G08780.1	21798944
AT1G13320.1	CDY36008	AT3G08780.1	21798944
AT1G13320.1	CDX73439	AT3G54850.1	21798944
AT1G13320.1	CDX78273	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24399	Canola	endoplasmic reticulum	9.23	66.67
CDY24398	Canola	extracellular, vacuole	32.31	51.85
Bra017348.1-P	Field mustard	cytosol	94.62	47.49
PGSC0003DMT400041034	Potato	cytosol	68.46	33.46
CDY69424	Canola	cytosol	87.69	21.47
CDX84993	Canola	plasma membrane	66.15	20.38
CDY13586	Canola	cytosol	87.69	19.16
PGSC0003DMT400033762	Potato	cytosol	86.15	19.08
Solyc05g009600.2.1	Tomato	plastid	86.15	19.08
CDY03849	Canola	cytosol	75.38	18.53
AT1G13320.1	Thale cress	cytosol	81.54	18.06
CDY51132	Canola	cytosol	80.77	17.92
CDY36104	Canola	cytosol	79.23	17.52
CDY42101	Canola	cytosol	79.23	17.49
Solyc04g007100.2.1	Tomato	cytosol	67.69	16.76
CDY66919	Canola	cytosol	11.54	4.0
CDY39185	Canola	cytosol	12.31	3.46
CDY31621	Canola	endoplasmic reticulum, extracellular	3.08	2.52
CDY13585	Canola	cytosol, endoplasmic reticulum, golgi	5.38	1.63
CDY49184	Canola	mitochondrion	1.54	1.21
KRH32720	Soybean	cytosol	0.77	0.93
CDY04181	Canola	endoplasmic reticulum	2.31	0.86
CDX70737	Canola	cytosol	0.77	0.84
CDX84994	Canola	mitochondrion	0.77	0.84
CDY35849	Canola	plasma membrane	0.77	0.74
CDX87453	Canola	cytosol	0.77	0.65
GSMUA_AchrUn_...	Banana	cytosol	0.77	0.41
PGSC0003DMT400041039	Potato	cytosol	0.77	0.31
CDY24397	Canola	cytosol	0.77	0.24
CDX84995	Canola	cytosol	0.0	0.0
CDY70440	Canola	cytosol	0.0	0.0
Solyc05g045950.1.1	Tomato	cytosol	0.0	0.0
VIT_00s2436g00010.t01	Wine grape	cytosol	0.0	0.0
VIT_00s2496g00010.t01	Wine grape	cytosol	0.0	0.0
VIT_01s0011g00330.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY04182	EnsemblPlantsGene:GSBRNA2T00117880001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
PFscan:PS50077	ProteinID:CDY04182	ProteinID:CDY04182.1	SUPFAM:SSF48371	UniParc:UPI0004EF26AF	MapMan:13.4.1.2.4
MapMan:18.4.24.1.2.1	:	:	:	:	:

Description

BnaA09g19600D

Coordinates

chrLK031949:-:1055745..1057096

Molecular Weight (calculated)

14613.6 Da

IEP (calculated)

4.188

GRAVY (calculated)

-0.095

Length

130 amino acids

Sequence
(BLAST)

001: MSTIEEPLYP IVVLIDELKN DDIQLRLNSI RRLSTIARAL GEEKTRKELI PFLSENNEDD DEVLLAMAEE LGVFIPYAGG VEHANDLLPP LETLSTVEEK
101: AVESLCRVGT QMRESELVDH FLPLVKRLAA

Best Arabidopsis Sequence Match ( AT1G13320.2 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRQFQT SNLTWPK

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.