Factsheet for VIT_03s0038g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2436g00010.t01	Wine grape	cytosol	52.45	93.75
VIT_00s2496g00010.t01	Wine grape	cytosol	52.45	88.24
VIT_01s0011g00330.t01	Wine grape	cytosol	51.75	87.06
VIT_19s0027g00070.t01	Wine grape	cytosol	40.56	75.32
VIT_00s0131g00290.t01	Wine grape	cytosol	40.56	75.32
VIT_04s0043g00200.t01	Wine grape	mitochondrion	39.16	72.73
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.16	72.73
VIT_15s0045g00050.t01	Wine grape	cytosol	84.62	67.22
VIT_04s0008g07090.t01	Wine grape	cytosol	30.07	47.78
GSMUA_Achr3P06410_001	Banana	cytosol	81.12	22.35
TraesCS5D01G172700.4	Wheat	cytosol	79.72	19.42
TraesCS5B01G165200.3	Wheat	cytosol, golgi	79.72	19.42
TraesCS5A01G168400.5	Wheat	cytosol	79.72	19.42
HORVU5Hr1G051850.3	Barley	cytosol	79.72	19.42
Zm00001d045482_P001	Maize	cytosol	79.72	19.42
KXG19189	Sorghum	cytosol	79.02	19.25
Zm00001d036031_P001	Maize	cytosol	79.02	19.25
VIT_17s0000g03870.t01	Wine grape	cytosol	84.62	18.85
KXG20320	Sorghum	cytosol	76.92	18.74
Zm00001d046506_P002	Maize	cytosol	76.22	18.32
VIT_01s0011g03280.t01	Wine grape	cytosol	73.43	17.89
CDX84993	Canola	plasma membrane	52.45	17.77

Protein Annotations

ArrayExpress:VIT_03s0038g00200	EMBL:FN596515	EnsemblPlants:VIT_03s0038g00200.t01	EnsemblPlantsGene:VIT_03s0038g00200	Gene3D:1.25.10.10	GO:GO:0003674
GO:GO:0005488	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFscan:PS50077	ProteinID:CCB60904	ProteinID:CCB60904.1	SUPFAM:SSF48371
UniParc:UPI000210AAA6	UniProt:F6I1T7	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:

Description

No Description!

Coordinates

chr3_random:+:139407..139909

Molecular Weight (calculated)

15857.2 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.062

Length

143 amino acids

Sequence
(BLAST)

001: MPMVKRSAAS NLGKFAATVE AAHSKADIMS IFEDLTQDDQ DSVRLLAVKG CAALGKLLEP QDCDKSWRVR YMVANQLYEL CEAVGPEPTR SDLVPAYVRL
101: LRDNEAEVRI AGAGKVTKFC WILNLKLAIP PYPSHVSSIF QKF

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.