Factsheet for GSMUA_Achr4P17080_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
extracellular 2
peroxisome 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	peroxisome
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P13900_001	Banana	cytosol	42.77	23.72
GSMUA_Achr8P14800_001	Banana	cytosol	46.82	20.4
GSMUA_Achr5P13870_001	Banana	cytosol	42.2	18.48
GSMUA_Achr7P13260_001	Banana	cytosol	31.21	14.44
GSMUA_Achr6P00740_001	Banana	cytosol	31.21	14.32
GSMUA_Achr4P27030_001	Banana	mitochondrion	32.95	14.07
GSMUA_Achr4P30390_001	Banana	mitochondrion	32.95	12.98
GSMUA_Achr7P08560_001	Banana	cytosol	28.32	12.93
GSMUA_Achr9P06670_001	Banana	plastid	33.53	12.29
GSMUA_Achr5P13890_001	Banana	nucleus	5.78	6.25
GSMUA_Achr4P17090_001	Banana	cytosol, nucleus, peroxisome	2.89	2.48

Protein Annotations

EnsemblPlants:GSMUA_Achr4P17080_001	EnsemblPlants:GSMUA_Achr4T17080_001	EnsemblPlantsGene:GSMUA_Achr4G17080_001	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6
PFAM:PF16113	SUPFAM:SSF52096	UniParc:UPI000296725D	UniProt:M0SPM1	MapMan:50.3.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G17080_001]

Coordinates

chr4:+:16062150..16063164

Molecular Weight (calculated)

19583.0 Da

IEP (calculated)

9.058

GRAVY (calculated)

0.234

Length

173 amino acids

Sequence
(BLAST)

001: MMKLSFNFLR FVYMKGDKTI IGREMQQQAP WLVSSYITSV KFCIFYIEVC VSHYCLYAIG KTFCVGGDVV AYFRYLTIGH WTFGAQVYKR QLMLNYLIAK
101: YNKPQVFLIN GATMGGGAGL SMNARYKIVT ENTVFAMPEA ALGLFPDVGA SYFLSRLPGY FGKAYDLNNS CED

Best Arabidopsis Sequence Match ( AT5G65940.2 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EVLQAFSI

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.