Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G055500.1 | Wheat | cytosol | 48.96 | 47.95 |
| TraesCS4A01G429100.1 | Wheat | cytosol | 48.72 | 47.84 |
| TraesCS7A01G060700.1 | Wheat | cytosol | 48.49 | 47.39 |
| KXG19180 | Sorghum | cytosol | 36.19 | 38.42 |
| Zm00001d036014_P001 | Maize | cytosol | 36.43 | 38.39 |
| Zm00001d045499_P001 | Maize | cytosol | 36.19 | 36.71 |
| Os06t0128600-01 | Rice | cytosol, mitochondrion | 5.1 | 33.85 |
| Os06t0128700-01 | Rice | cytosol | 9.51 | 32.8 |
| HORVU1Hr1G048560.1 | Barley | cytosol | 32.25 | 26.73 |
| GSMUA_Achr1P07900_001 | Banana | cytosol, nucleus, plastid | 26.91 | 25.38 |
| HORVU7Hr1G029900.6 | Barley | cytosol | 25.75 | 23.32 |
| HORVU4Hr1G059710.8 | Barley | cytosol | 19.72 | 17.89 |
| HORVU3Hr1G116350.2 | Barley | plastid | 17.4 | 16.2 |
| HORVU1Hr1G043970.3 | Barley | plastid | 10.44 | 15.9 |
| HORVU1Hr1G005260.1 | Barley | plastid | 17.63 | 15.14 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G011250.3 | EnsemblPlantsGene:HORVU7Hr1G011250 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR24128 | PANTHER:PTHR24128:SF18 | PFscan:PS50089 | ScanProsite:PS00518 |
| SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B488BD8 | UniProt:A0A287VI73 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr7H:-:15843721..15850758
Molecular Weight (calculated)
42988.1 Da
IEP (calculated)
10.744
GRAVY (calculated)
-0.495
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: GERAGVRGAG RAAGGGGEGR RRGGGAAAAG GGSGARAVHG HLRQPQLAAP PRRHQGPPRD RGGAAGEGSR REREERVRTD AVDASLPLRA LGGGSDVARL
101: QMQRVEGGRA ERAHGAARGG GGRARPVRAA AAGGRGRRRR GRQCPVREPG GRRRRHGAAP GGAARARGLR APAGRRAGVP ARADAALRRG PHGGHRRREX
201: XXXXXXRCCQ VLVSRGADRM AANCNGWLAL DVARMWKCNW LEHVLAXXXX XXXXXFPPSP HLSLPLPSLL AVARDYAAAS PDPFAALAGN DDDDACSVCL
301: ERPCNVAAEV CGHELCLKCA MDLCTVMKAY EVPGLAGAVP CPLCRSGIAS FRKAVVAAAA PNEDDHRLSK SSSSSLPCGC GRCQDRHGSP EEEEEEKSTC
401: RSYGRGGLGG PEAAIAPLYC APFTGPSAIL S
101: QMQRVEGGRA ERAHGAARGG GGRARPVRAA AAGGRGRRRR GRQCPVREPG GRRRRHGAAP GGAARARGLR APAGRRAGVP ARADAALRRG PHGGHRRREX
201: XXXXXXRCCQ VLVSRGADRM AANCNGWLAL DVARMWKCNW LEHVLAXXXX XXXXXFPPSP HLSLPLPSLL AVARDYAAAS PDPFAALAGN DDDDACSVCL
301: ERPCNVAAEV CGHELCLKCA MDLCTVMKAY EVPGLAGAVP CPLCRSGIAS FRKAVVAAAA PNEDDHRLSK SSSSSLPCGC GRCQDRHGSP EEEEEEKSTC
401: RSYGRGGLGG PEAAIAPLYC APFTGPSAIL S
001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA
Arabidopsis Description
XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.