CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27620_001	Banana	cytosol	11.68	48.12
CDY29372	Canola	cytosol	17.15	46.53
CDY44204	Canola	cytosol	33.03	46.41
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	12.77	45.16
CDY62935	Canola	cytosol	44.71	44.3
CDY54337	Canola	cytosol	44.53	43.81
GSMUA_Achr1P27690_001	Banana	mitochondrion	13.87	37.81
KRH17455	Soybean	extracellular	10.95	37.27
Os07t0573300-01	Rice	cytosol	33.76	35.78
Os06t0724100-01	Rice	cytosol	31.75	35.66
TraesCS2B01G223000.1	Wheat	cytosol	32.12	35.06
HORVU2Hr1G037770.2	Barley	cytosol	31.2	34.06
TraesCS2A01G184400.2	Wheat	cytosol	30.66	33.47
EER97421	Sorghum	cytosol	32.3	33.15
TraesCS2D01G203300.1	Wheat	cytosol	30.29	33.07
OQU77119	Sorghum	cytosol	30.11	32.8
Zm00001d021878_P003	Maize	cytosol	32.3	32.66
GSMUA_Achr8P33940_001	Banana	cytosol	30.66	32.25
Zm00001d014808_P001	Maize	extracellular	20.99	30.42
GSMUA_Achr1P26420_001	Banana	cytosol	27.74	30.04
TraesCS7D01G528300.1	Wheat	cytosol	27.74	29.86
CDY37424	Canola	extracellular	11.31	21.83
CDY25311	Canola	cytosol, plastid	7.85	4.16
CDY52319	Canola	plastid	7.3	3.97

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	GO:A0A078HZW2	UniProt:A0A078HZW2	EnsemblPlants:CDY43412	ProteinID:CDY43412
ProteinID:CDY43412.1	GO:GO:0000813	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0031902	GO:GO:0036258	GO:GO:0043130	GO:GO:0046872	GO:GO:0055072	GO:GO:0070676
EnsemblPlantsGene:GSBRNA2T00076624001	InterPro:IPR013083	PFAM:PF01363	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064
SUPFAM:SSF57903	UniParc:UPI0004EE7482	InterPro:Znf_FYVE	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC07g14790DBnaC07g14790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZW2]

Coordinates

chrLK032556:-:56315..59397

Molecular Weight (calculated)

60417.4 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.675

Length

548 amino acids

Sequence
(BLAST)

001: MQEGDYSSYY HHQYPQYPNA SPNPNPNQSE HLRVCFGDHH APPSAPAAQP PPPSPPATSL NPNSYSAFNQ PPTYHPPVSP YGSLTPYQQS ATPPMYYPPF
101: DQHQTSAYPP LSSAPAPNPN PPQYSSSLYS APPYTGGGSS IPPSYEKPYD KGGADRIIYT ENDLRAEVTP PSFDDSYGDG VFAYSGGKVD PYGSPRGTAP
201: KSSNSTLFDD YGRSISLSSG RDSSAGSNLL RSSELSPRLM CRKIGLDGLR MLDPSTSPTL RIYLLENITR CELFGLKTPV NIEAKRIRLQ SNSYTTNTLL
301: DTVTAAMFQA KEIWGSSRPP VSAKLVPDEA VSKCTLCGSD FGAFNLRHHC RNCGDDCSQP LTAEENAPQI RVFDRCMAEV SQRLSYAKES ASRNVSVQSY
401: GDLARKLLVL GSKSVTKESM SESPLLGSKT VTTKLTSKSP QNTTTDKSEY DDQNTDEPSS VITQLPHMHA VWSLRSDRAW LELGRYIATE RDLFRNVDTT
501: LVHAFSSTLR CYLPKTVANP FHVSRHSKSS IKLYGKNRRK FVLYRKKS

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.