CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52319	Canola	plastid	83.64	85.8
Bra031406.1-P	Field mustard	nucleus	64.47	72.95
AT1G61690.1	Thale cress	cytosol	67.47	59.52
PGSC0003DMT400055915	Potato	cytosol	48.98	48.42
Solyc02g079850.2.1	Tomato	cytosol	45.01	47.5
GSMUA_Achr5P22350_001	Banana	cytosol	45.69	43.95
Zm00001d017029_P001	Maize	cytosol	44.34	42.88
EES05335	Sorghum	plastid	45.69	42.79
TraesCS5B01G485600.1	Wheat	cytosol, plastid	45.01	42.74
TraesCS5D01G485400.1	Wheat	cytosol, plastid	45.11	42.71
TraesCS5A01G472700.3	Wheat	cytosol	45.4	42.29
Os03t0669800-01	Rice	plasma membrane	38.04	42.17
KRH41976	Soybean	cytosol	47.63	39.2
KRH49913	Soybean	cytosol	46.95	38.71
GSMUA_Achr7P20370_001	Banana	nucleus	38.72	38.28
VIT_00s0361g00100.t01	Wine grape	cytosol	39.79	36.7
OQU88236	Sorghum	nucleus	36.59	35.76
CDY29372	Canola	cytosol	2.03	10.4
CDY37424	Canola	extracellular	2.81	10.21
CDY62935	Canola	cytosol	5.42	10.13
CDY54337	Canola	cytosol	5.42	10.05
CDY44204	Canola	cytosol	3.78	10.0
CDY43412	Canola	nucleus	4.16	7.85

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078GIU4	UniProt:A0A078GIU4	EnsemblPlants:CDY25311	ProteinID:CDY25311
ProteinID:CDY25311.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00029392001	InterPro:IPR011990	InterPro:IPR013083	InterPro:IPR017455	InterPro:IPR019734	PFAM:PF01363
PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF469	SMART:SM00028	SMART:SM00064	SUPFAM:SSF48452
SUPFAM:SSF57903	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEC2F0	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC01g29800DBnaC01g29800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIU4]

Coordinates

chrLK032173:-:146518..150626

Molecular Weight (calculated)

113456.0 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.864

Length

1033 amino acids

Sequence
(BLAST)

0001: MLEKIGLPAK PSLRGNSWVV DASHCQGCSS QFNFINRKHH CRRCGGLFCG SCTQQRMSLR GQGDSPVRIC DPCKQLEEAA RFELRHGYKN RAAKGGSKRT
0101: VKNEDDVLSE ILGSDVDVSS SSESDRVTSK EMGSSSSMEL DATPQDEILG SDVDVSSSSE SDRVTSKEMG SSSSMELDAT PEELRKQAVE EKNKYRVLKQ
0201: QGKSEEALKA FKRGKELERQ ADALEISLRK DRKRALSMRD VSAATQKNKA ATKESSKSQK PPRKDDLAAE LRDLGWSDDE DKKPATVSLE GEFSSLLREI
0301: PGRTTNPQQK SGGGIDKSQV IAIKKKALAL KREGKLAEAK EELKRAKVLE REIEEQELLG GADESDDELS ALINSMDDDK EDDLLPQYEG SHDFDIGNLV
0401: GTVDDIGVDG EFDVTDEDME DPAIASALKS LGWTEDPGHR ENLHTQSPPN NREERLAEIQ ALKREALTLK RAGNAAEALA TLKKAKLLER ELESAADTSS
0501: QGADTSLKHP PRSRLAIQRE LLAVKKKALT LKREGKFNEA EEELKKGAVL QEQLEELDNS SKLAAAGKAI REKDMPDISV DSLDDDGEVD VKDEDVTEND
0601: MKDPALLSTL KNLGWEDEEP KKQEAAFSSM QSTGPRIAAK TKGQIQRELL DLKRKALAFK RQGKNREADE LYSNAKVLEA QLAELETPKD EPVGEALSGQ
0701: QFEKKVSAST INPTNYMDVD LLVGSQMDDK SSGSFSAHGG MSESRPSMID LLTGEQCERS EFGTQQTLAS EEDSAPGSIE SASVQNTSPQ NTLKQDILAH
0801: KRKALALKKE GKISEAKEAL QQAKLLERRL QEGENPSPEK LGRDGLVSAT QPPVVREKEN SPSSSAGPKP MSSRDRFKLQ QESLSHKRQA MKLRREGKME
0901: EAEAEFEIAK TLEAQLEDST SSKSEPVDDN VAVEDFLDPQ LLSALKAIGL DSPANASASK PDTTQATPKP VREAVKPSPA KESDNSQERS QLEERIKAEK
1001: IKAVTLKRSG KQAEALDALR RAKLYEKKLN ALA

Best Arabidopsis Sequence Match ( AT1G61690.1 )
(BLAST)

0001: MLEKIGLPPK PSLRGNSWVV DASHCQGCSS QFTFINRKHH CRRCGGLFCG TCTQQRLSLR GQGDSPVRIC EPCKKIEEAA RFELRHGYKN RAAKGGSSKR
0101: TVKNEDDVLS EILGSDVDVS SSSESVSSTD RNASKEMASS SSNKGMELDA SPEELRKQAV EAKNKYRILK GEGKSDEALK AFKRGRELER EADALEISLR
0201: RNRKRELSMR NVAETQNKAA TKESSKSQKP LRQGGKGNDD LAADLRELGW SDDEDKKPAT ISLEGEFSSL LREIPRSANP QKTGGIDKSQ VIALKRKALT
0301: LKREGKLAEA KDELKKAKIL ERELEEQELL GGADGSDDEL SALINSMDDD KEDDLLAQYE GSHDFDISNL VGNLDDIGVH GEYDVTDEDM EDPAIAAALK
0401: SLGWSEDPGH HENVHSRPSP KNRDESLAEI QTLKREALNL KRAGNVVEAM ATLKKAKLLE KELEAADTSS ETVDTTRAER DTSLKPPPRS RLAIQKELLA
0501: VKKKALTLRR EGKFNEAEEE LKKGAVLQNQ LDELDNSSKL AATGKATREK GNDLPDISSL DDDGEVDVKD EELNDPNYLS MLKSLGWNDE DNNPAGPSSE
0601: KSDPLNSRPG KTAEAQGAYE VRVTKPRRTK AEIQRELLGL KRKALTLRRQ GNVDEAEEVL NQTQILEAQI MEIDSGKNLY ADSDQPKKRS NDLATDSRLN
0701: GGDDSVTEND MKDPALLSTL KNLGWEDEEP KKEEASFGSV QSSGPRIAAK SKGQIQRELL DLKRKALAFK RQGKTGDADE LYSKASVLEA QLAELETPKM
0801: EMKGSASAIK PENYMDVDLL VGSQMEDKAI KSASVSHAPQ DSYDLLGDFI SPAKSGSSGV VSQPGQQQPS MMDLLTGEHS ERSQIHAEKG NAETMSGFRS
0901: GNNHGAEQRV AREESEPSHI QSASIQNTSP QNTLKQEILA HKKKALALKR EGNISEAKKA LQEAKLLERR LQEGENPSPE KLGRDDMVST TEDPPAREKE
1001: NSPSSSAPKA MSGRDRFKLQ QESLSHKRQA MKLRREGKMQ EAEAEFEIAK TLEAQLEDST SSKPEPVDDV AVEDFLDPQL LSALKAIGLD NPVNPPPVSK
1101: TDTTQAAAKP NPVKESNRNT NNQERSQLEE RIKAEKVKAV TFKRAGKQAE ALDALRRAKL YEKKLNALAS S

Arabidopsis Description

At1g61690 [Source:UniProtKB/TrEMBL;Acc:Q6NPS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.