Factsheet for VIT_00s0361g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031405.1-P	Field mustard	cytosol	5.62	55.26
Solyc02g079850.2.1	Tomato	cytosol	37.41	42.8
PGSC0003DMT400055915	Potato	cytosol	38.93	41.72
CDY25311	Canola	cytosol, plastid	36.7	39.79
CDY52319	Canola	plastid	35.62	39.62
Os03t0669800-01	Rice	plasma membrane	32.32	38.84
GSMUA_Achr5P22350_001	Banana	cytosol	36.61	38.17
GSMUA_Achr7P20370_001	Banana	nucleus	34.2	36.65
TraesCS5B01G485600.1	Wheat	cytosol, plastid	34.29	35.29
TraesCS5D01G485400.1	Wheat	cytosol, plastid	34.38	35.29
Zm00001d017029_P001	Maize	cytosol	33.3	34.93
TraesCS5A01G472700.3	Wheat	cytosol	34.29	34.63
AT1G61690.1	Thale cress	cytosol	36.16	34.59
KRH49913	Soybean	cytosol	38.12	34.08
EES05335	Sorghum	plastid	33.48	34.0
KRH41976	Soybean	cytosol	36.79	32.83
VIT_00s0361g00110.t01	Wine grape	nucleus	4.38	30.06
OQU88236	Sorghum	nucleus	27.32	28.95
VIT_00s0372g00010.t01	Wine grape	mitochondrion, nucleus	8.66	15.28
VIT_00s0847g00010.t01	Wine grape	nucleus	5.27	14.18
VIT_18s0001g14750.t01	Wine grape	cytosol	5.18	9.91
VIT_04s0023g03900.t01	Wine grape	cytosol	1.79	9.85
VIT_04s0023g03920.t01	Wine grape	nucleus	2.86	8.91

Protein Annotations

EntrezGene:100263747	wikigene:100263747	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB60984	ProteinID:CCB60984.1
ncoils:Coil	UniProt:F6I217	EMBL:FN596525	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046872	InterPro:IPR011990	InterPro:IPR013083	InterPro:IPR017455	InterPro:IPR019734	EntrezGene:LOC100263747
wikigene:LOC100263747	PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF469	SMART:SM00028
SMART:SM00064	SUPFAM:SSF48452	SUPFAM:SSF57903	TIGR:TC65547	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0002109998	ArrayExpress:VIT_00s0361g00100	EnsemblPlantsGene:VIT_00s0361g00100	EnsemblPlants:VIT_00s0361g00100.t01	unigene:Vvi.16239	RefSeq:XP_002271481
RefSeq:XP_002271481.2	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrUn:+:25656548..25663820

Molecular Weight (calculated)

124202.0 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.796

Length

1120 amino acids

Sequence
(BLAST)

0001: MLEKIGLPPK PSLRGNIWVH HCRRCGGLFC NSCTQQRMVL RGQGDSPVRI CDPCKNLEEA ARFEMRHGHK NKSGKGSSRL TSKHEDEVLN QILGKDGKES
0101: FSSGRESTSD TVSSIERSTS SASCSKLEEL SSQDMEGQIV RSLTVNEPNH VPGEMGSISP EELRQQALDE KGKYKILKGE GKSEEALKAF KRGKELERQA
0201: GALEISLRKS RKRALSSSNI AENQKIMDDP KESGRKNRLL PQMGKEKDDL AAELRELGWS DRELHDADKK PVNISLEGEL STLLREVPQK TNTDKETHGI
0301: DKSEVIALKK KALMLKREGK LIEAKEELKR AKLLEKQLEE QEFLAEAEDS DDEISSLIRS IDNDKQGDFS IGYNPANDFD FDHLVGMADD IGLDGNFEAM
0401: DEDMDDPEMA AALKSLGWSE DSHHPVDIVA QSAPIDRDTL LHEIQSLKRE ALNEKRAGNT SVAMVLLKKA KVLERDLDGF DSQGDNSSAN DPAMFQKGST
0501: SQTADNSLML NKADNKNVNG MKIVEPKMAP KSKLMIQKEL LGLKKKALAL RREGRLDEAE EELKKGKVLE QQLEEMDNAS KVKFTQVDVS SKHPDISGTL
0601: DLGDVGEEGD VTDQDLNDPM YLLLLSNMGW KDEDNETVSF PSKSRKQNDS LSTQIADSSI IQAPTTTPVG TSRRSKGEIQ RELLGLKRKA LALRRQGETE
0701: EAEEVLRLAR VLEAQISEME APTKEAPVEN KYKEDKAIKY PLESSSDKGG EGDATEKDLG DPVLLSMQKN LGWKDEDRPE TTQAEPFKQN AGIYTHYTDP
0801: SVIQYNSEVP VISARKSKGE IQRELLGLKR KALTLRRQGK TEEAEEVLRN AKILEAQMDM EAPRTELLLD PSKDKDLESF ESLITTEKHG SMKDVVEVNK
0901: QSVQAVVDPT EKVEWATSSG LKESETVKPP SMSSGLLIPE MSQIVEGNNP LLVDIGPPGK MGISEGTYFV PPSDQSGNIM DLLTGDEWNA SHVPSEKQEG
1001: EWNLSSGISS FANPPLLVES LKSTNEDLGS KVDAAPQKRE EMVDADRKLH VSEANSGQAI ASQKNKSSIQ QEILSHKRKA VSLKREGKLA EARDELRQAK
1101: LLEKNLEEDD PQPRSSPIPV

Best Arabidopsis Sequence Match ( AT1G61690.1 )
(BLAST)

0001: MLEKIGLPPK PSLRGNSWVV DASHCQGCSS QFTFINRKHH CRRCGGLFCG TCTQQRLSLR GQGDSPVRIC EPCKKIEEAA RFELRHGYKN RAAKGGSSKR
0101: TVKNEDDVLS EILGSDVDVS SSSESVSSTD RNASKEMASS SSNKGMELDA SPEELRKQAV EAKNKYRILK GEGKSDEALK AFKRGRELER EADALEISLR
0201: RNRKRELSMR NVAETQNKAA TKESSKSQKP LRQGGKGNDD LAADLRELGW SDDEDKKPAT ISLEGEFSSL LREIPRSANP QKTGGIDKSQ VIALKRKALT
0301: LKREGKLAEA KDELKKAKIL ERELEEQELL GGADGSDDEL SALINSMDDD KEDDLLAQYE GSHDFDISNL VGNLDDIGVH GEYDVTDEDM EDPAIAAALK
0401: SLGWSEDPGH HENVHSRPSP KNRDESLAEI QTLKREALNL KRAGNVVEAM ATLKKAKLLE KELEAADTSS ETVDTTRAER DTSLKPPPRS RLAIQKELLA
0501: VKKKALTLRR EGKFNEAEEE LKKGAVLQNQ LDELDNSSKL AATGKATREK GNDLPDISSL DDDGEVDVKD EELNDPNYLS MLKSLGWNDE DNNPAGPSSE
0601: KSDPLNSRPG KTAEAQGAYE VRVTKPRRTK AEIQRELLGL KRKALTLRRQ GNVDEAEEVL NQTQILEAQI MEIDSGKNLY ADSDQPKKRS NDLATDSRLN
0701: GGDDSVTEND MKDPALLSTL KNLGWEDEEP KKEEASFGSV QSSGPRIAAK SKGQIQRELL DLKRKALAFK RQGKTGDADE LYSKASVLEA QLAELETPKM
0801: EMKGSASAIK PENYMDVDLL VGSQMEDKAI KSASVSHAPQ DSYDLLGDFI SPAKSGSSGV VSQPGQQQPS MMDLLTGEHS ERSQIHAEKG NAETMSGFRS
0901: GNNHGAEQRV AREESEPSHI QSASIQNTSP QNTLKQEILA HKKKALALKR EGNISEAKKA LQEAKLLERR LQEGENPSPE KLGRDDMVST TEDPPAREKE
1001: NSPSSSAPKA MSGRDRFKLQ QESLSHKRQA MKLRREGKMQ EAEAEFEIAK TLEAQLEDST SSKPEPVDDV AVEDFLDPQL LSALKAIGLD NPVNPPPVSK
1101: TDTTQAAAKP NPVKESNRNT NNQERSQLEE RIKAEKVKAV TFKRAGKQAE ALDALRRAKL YEKKLNALAS S

Arabidopsis Description

At1g61690 [Source:UniProtKB/TrEMBL;Acc:Q6NPS1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.