Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g03900.t01 | Wine grape | cytosol | 45.96 | 81.28 |
| Solyc02g062000.2.1 | Tomato | cytosol | 36.49 | 28.11 |
| PGSC0003DMT400061372 | Potato | cytosol | 36.21 | 27.6 |
| VIT_18s0001g14750.t01 | Wine grape | cytosol | 42.9 | 26.32 |
| PGSC0003DMT400009233 | Potato | cytosol | 37.05 | 25.24 |
| VIT_00s0361g00110.t01 | Wine grape | nucleus | 3.9 | 8.59 |
| VIT_00s0847g00010.t01 | Wine grape | nucleus | 4.46 | 3.85 |
| VIT_00s0372g00010.t01 | Wine grape | mitochondrion, nucleus | 5.57 | 3.15 |
| VIT_00s0361g00100.t01 | Wine grape | cytosol | 8.91 | 2.86 |
| GSMUA_Achr1P27610_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_04s0023g03920 | EMBL:FN594959 | EnsemblPlants:VIT_04s0023g03920.t01 | EnsemblPlantsGene:VIT_04s0023g03920 | EntrezGene:100241024 | EntrezGene:LOC100241024 |
| PANTHER:PTHR22835 | PANTHER:PTHR22835:SF473 | ProteinID:CCB44333 | ProteinID:CCB44333.1 | RefSeq:XP_002269523 | RefSeq:XP_002269523.2 |
| SEG:seg | UniParc:UPI0002108685 | UniProt:F6GWJ8 | wikigene:100241024 | wikigene:LOC100241024 | MapMan:22.5.4.3.7 |
Description
No Description!
Coordinates
chr4:+:20392633..20394902
Molecular Weight (calculated)
39287.4 Da
IEP (calculated)
5.788
GRAVY (calculated)
-0.548
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGDLTASY YQYYQSYFQH SDPNPTSNSS DLQASAPPFS SDYQSYSSPY SSYSQYSDNV SGHPPTAPTC PPNPNFQPSE LSSQSSFSNH FQPYDQNQTS
101: HSYDPPYPVH NSNMNSLFPG NSYSTSAGQA NTLMPPNHEG GMKLDGRGGY FDESGSHAGF RSDGYGGGVY AYDGSKMEPY GGRGSGPEPS MKTAFDDYGR
201: PISLLNANVE VGSRPVNKIV KATPKIEVQN DTKSGVQKFR VKLLAEAGGQ SNTDVLCQIG LDGIRMLDPA SGRTLRIYPL DMLTKWEVLD SFIFAFWAKS
301: SIDIEPRCIR LQSNNYTVNI ILDTLTASSV QVGTTLFYFS VSCPCLTHMH QLIALALGK
101: HSYDPPYPVH NSNMNSLFPG NSYSTSAGQA NTLMPPNHEG GMKLDGRGGY FDESGSHAGF RSDGYGGGVY AYDGSKMEPY GGRGSGPEPS MKTAFDDYGR
201: PISLLNANVE VGSRPVNKIV KATPKIEVQN DTKSGVQKFR VKLLAEAGGQ SNTDVLCQIG LDGIRMLDPA SGRTLRIYPL DMLTKWEVLD SFIFAFWAKS
301: SIDIEPRCIR LQSNNYTVNI ILDTLTASSV QVGTTLFYFS VSCPCLTHMH QLIALALGK
001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
Arabidopsis Description
FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.