Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g062000.2.1 | Tomato | cytosol | 84.5 | 85.41 |
| PGSC0003DMT400009233 | Potato | cytosol | 62.84 | 56.17 |
| VIT_04s0023g03900.t01 | Wine grape | cytosol | 21.87 | 50.74 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 8.49 | 44.94 |
| PGSC0003DMT400025563 | Potato | cytosol | 49.04 | 41.03 |
| VIT_04s0023g03920.t01 | Wine grape | nucleus | 27.6 | 36.21 |
| GSMUA_Achr1P27610_001 | Banana | cytosol | 4.46 | 29.58 |
| PGSC0003DMT400055915 | Potato | cytosol | 12.53 | 5.65 |
Protein Annotations
| EntrezGene:102586445 | MapMan:22.5.4.3.7 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013083 | InterPro:IPR017455 | UniProt:M1C7E2 | PFAM:PF01363 | EnsemblPlantsGene:PGSC0003DMG400023883 | PGSC:PGSC0003DMG400023883 |
| EnsemblPlants:PGSC0003DMT400061372 | PFscan:PS50178 | PANTHER:PTHR22835 | PANTHER:PTHR22835:SF473 | SMART:SM00064 | SUPFAM:SSF57903 |
| UniParc:UPI0002958963 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023883]
Coordinates
chr2:-:19973500..19980190
Molecular Weight (calculated)
53165.2 Da
IEP (calculated)
7.186
GRAVY (calculated)
-0.758
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MHNGDVGSSY YHQPHLHNPN PSSTPPDHSY NSYASAPPEP SSYSSSDYST TFPPYSHQQQ PYTFPHLDAP HPNYYYPPYD QNQTPMSYDY TAPNYGSSAH
101: HTIENNGSYG DSGIYKYNGT KDELYKESRS ESNAGVMFDD YGRPINVQNQ RENQGYESIR KIVKATPKME EQQDVTAGVL KFRVKLLSEG IGQSDMDVLC
201: QIGLDGIHLL DPATSRTLRK YLLENVTRCE VLDTYIFAFW AKNSVDMEPR RIRLKSNSYT VNNMLDTVTA ASIQVKEMGE SNKPSDSIKG SEQAAEKKKG
301: FADLMKLMRP LNEEKDFWVP DEAVRKCTAC ATDFSAFNRK HHCRNCGDIF CDKCTQGRVA LTADEDAQPV RVCDRCMAEV TQRLSNAMEA TTKVAALQSH
401: EDLTRKLKEV MDKNRKTSTG LSSQGSKGMR EVECPTCTVH LQVRYHRPCF SSRLVLFVSI RGNPRIYCPC G
101: HTIENNGSYG DSGIYKYNGT KDELYKESRS ESNAGVMFDD YGRPINVQNQ RENQGYESIR KIVKATPKME EQQDVTAGVL KFRVKLLSEG IGQSDMDVLC
201: QIGLDGIHLL DPATSRTLRK YLLENVTRCE VLDTYIFAFW AKNSVDMEPR RIRLKSNSYT VNNMLDTVTA ASIQVKEMGE SNKPSDSIKG SEQAAEKKKG
301: FADLMKLMRP LNEEKDFWVP DEAVRKCTAC ATDFSAFNRK HHCRNCGDIF CDKCTQGRVA LTADEDAQPV RVCDRCMAEV TQRLSNAMEA TTKVAALQSH
401: EDLTRKLKEV MDKNRKTSTG LSSQGSKGMR EVECPTCTVH LQVRYHRPCF SSRLVLFVSI RGNPRIYCPC G
001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
Arabidopsis Description
FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.