Factsheet for Zm00001d022160_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003061_P001
Zm00001d010546_P003
Zm00001d022343_P001
Zm00001d022344_P001
Zm00001d022346_P001
Zm00001d038393_P012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50360.1	Zm00001d003061_P001	AT2G39340.1	19843313
AT3G50360.1	Zm00001d010546_P003	AT2G39340.1	19843313
AT3G50360.1	Zm00001d038393_P012	AT2G39340.1	19843313
AT3G50360.1	Zm00001d022343_P001	AT3G06290.1	19843313
AT3G50360.1	Zm00001d022344_P001	AT3G06290.1	19843313
AT3G50360.1	Zm00001d022346_P001	AT3G06290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36700	Sorghum	cytosol	88.37	88.37
HORVU2Hr1G030640.1	Barley	cytosol	85.47	86.98
TraesCS2D01G173900.1	Wheat	cytosol, mitochondrion	84.88	86.9
TraesCS2B01G192400.1	Wheat	cytosol, mitochondrion	84.88	86.9
TraesCS2A01G166500.1	Wheat	cytosol, mitochondrion	84.88	86.9
KRH10567	Soybean	endoplasmic reticulum	71.51	72.35
AT3G50360.1	Thale cress	cytosol	70.35	71.6
Os07t0618800-01	Rice	plasma membrane	86.05	70.81
Solyc04g026350.2.1	Tomato	cytosol	70.93	70.52
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	68.6	70.24
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	68.6	70.24
GSMUA_Achr6P10140_001	Banana	cytosol	65.12	68.71
VIT_05s0094g01240.t01	Wine grape	cytosol	65.7	68.48
KRH43884	Soybean	cytosol	49.42	64.89
CDX83123	Canola	golgi	70.35	63.35
KRG98826	Soybean	cytosol	57.56	63.06
KRG98823	Soybean	cytosol	57.56	63.06
CDY62753	Canola	cytosol	70.93	61.0
Zm00001d014271_P001	Maize	cytosol	63.37	60.89
CDX75623	Canola	extracellular	61.63	58.89
AT4G37010.2	Thale cress	cytosol, mitochondrion	58.14	58.48
VIT_07s0031g00700.t01	Wine grape	cytosol	66.86	56.93
Zm00001d008278_P001	Maize	cytosol	31.4	42.52
Zm00001d038545_P001	Maize	cytosol, mitochondrion	33.14	38.26
Zm00001d047597_P001	Maize	cytosol	31.98	37.41
Zm00001d041430_P001	Maize	cytosol	36.05	36.69
Zm00001d052415_P001	Maize	cytosol	32.56	35.44
Zm00001d043144_P001	Maize	plasma membrane	37.21	34.97
Zm00001d005003_P002	Maize	cytosol	36.05	34.44
Zm00001d038543_P004	Maize	plastid	32.56	33.14
Zm00001d049665_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	27.91	32.43
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	27.33	31.76
Zm00001d053188_P001	Maize	cytosol	19.77	31.19
Zm00001d028948_P001	Maize	cytosol	35.47	30.96
Zm00001d039110_P001	Maize	cytosol	29.07	29.07
Zm00001d033980_P001	Maize	cytosol	25.0	27.39
Zm00001d010649_P001	Maize	extracellular	22.09	26.76
Zm00001d044411_P001	Maize	plastid	29.07	21.37

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100284444	MapMan:14.6.1.1	MapMan:16.11.2.3	UniProt:B4FY36	EMBL:BT042024
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EMBL:EU958859	EMBL:EU968394	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	ProteinID:ONM59695.1	ProteinID:ONM59697.1	ProteinID:ONM59698.1
PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF167	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0000428668	EnsemblPlantsGene:Zm00001d022160	EnsemblPlants:Zm00001d022160_P003	EnsemblPlants:Zm00001d022160_T003	:

Description

caltractin1 caltractin1

Coordinates

chr7:+:171442298..171444896

Molecular Weight (calculated)

19774.2 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.830

Length

172 amino acids

Sequence
(BLAST)

001: MSFNQSTVKG QARRERPRAR PHGLTQQRRQ EIKEAFDLFD TDNSGTIDAK ELNVAMRALG FEMTEEQIRQ MIADVDKDGS GAIDYEEFEH MMTAKIGERD
101: SKEELSKAFR IIDQDGNGKI SNIDIQRIAK ELGVNLTLDE IQDMVQEADR NGDGEIDFDE FIRMMRRTSF GY

Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)

001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN

Arabidopsis Description

CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.