Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 |
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002630_P002 | |
| Zm00001d026084_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | Zm00001d002630_P002 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | Zm00001d026084_P001 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79799 | Sorghum | cytosol | 97.3 | 97.3 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 95.27 | 95.27 |
| Os08t0117400-01 | Rice | plasma membrane | 93.92 | 93.92 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 91.22 | 91.22 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 90.54 | 90.54 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 89.86 | 89.86 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 82.43 | 82.43 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 77.7 | 78.23 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 77.7 | 78.23 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 77.03 | 77.55 |
| CDY21044 | Canola | cytosol | 77.03 | 77.03 |
| CDX98074 | Canola | cytosol | 77.03 | 77.03 |
| CDY31259 | Canola | cytosol | 77.03 | 77.03 |
| CDY30070 | Canola | cytosol | 77.03 | 77.03 |
| PGSC0003DMT400070433 | Potato | cytosol | 75.68 | 76.19 |
| Bra019756.1-P | Field mustard | cytosol | 75.68 | 75.68 |
| AT1G12310.1 | Thale cress | cytosol | 75.68 | 75.68 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 76.35 | 75.33 |
| CDY26556 | Canola | cytosol | 75.0 | 75.0 |
| Bra026976.1-P | Field mustard | cytosol | 75.0 | 75.0 |
| CDY15991 | Canola | cytosol | 74.32 | 74.32 |
| AT1G62820.1 | Thale cress | cytosol | 72.3 | 72.3 |
| Solyc11g072270.1.1 | Tomato | cytosol | 75.0 | 71.15 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 92.57 | 70.26 |
| KRH04023 | Soybean | cytosol | 62.84 | 63.27 |
| Zm00001d008278_P001 | Maize | cytosol | 39.19 | 45.67 |
| Zm00001d038545_P001 | Maize | cytosol, mitochondrion | 41.89 | 41.61 |
| Zm00001d047597_P001 | Maize | cytosol | 39.86 | 40.14 |
| Zm00001d043144_P001 | Maize | plasma membrane | 48.65 | 39.34 |
| Zm00001d038543_P004 | Maize | plastid | 41.22 | 36.09 |
| Zm00001d041430_P001 | Maize | cytosol | 39.86 | 34.91 |
| Zm00001d005003_P002 | Maize | cytosol | 40.54 | 33.33 |
| Zm00001d028948_P001 | Maize | cytosol | 43.24 | 32.49 |
| Zm00001d052415_P001 | Maize | cytosol | 32.43 | 30.38 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 31.76 | 27.33 |
| Zm00001d033980_P001 | Maize | cytosol | 28.38 | 26.75 |
| Zm00001d010649_P001 | Maize | extracellular | 24.32 | 25.35 |
| Zm00001d014271_P001 | Maize | cytosol | 30.41 | 25.14 |
| Zm00001d039110_P001 | Maize | cytosol | 29.05 | 25.0 |
| Zm00001d053188_P001 | Maize | cytosol | 13.51 | 18.35 |
| Zm00001d044411_P001 | Maize | plastid | 27.03 | 17.09 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | ProteinID:AQK78346.1 | UniProt:B6T4U8 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | EMBL:EU960013 | EMBL:EU976498 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:IPR002048 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF214 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000182C499 | EnsemblPlantsGene:Zm00001d035095 | EnsemblPlants:Zm00001d035095_P001 |
| EnsemblPlants:Zm00001d035095_T001 | : | : | : | : | : |
Description
Calmodulin
Coordinates
chr6:-:4940987..4941433
Molecular Weight (calculated)
16556.7 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.322
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKDLTEDQ IASMREAFSL FDTDGDGRIA PSELGVLMRS LGGNPTQAQL RDIAAQEKLT APFDFPRFLD LMRAHLKPEP FDRPLRDAFR VLDKDGSGTV
101: AVADLRHVLT SIGEKLEAHE FDEWIREVDV APDGTIRYDD FILRIVAK
101: AVADLRHVLT SIGEKLEAHE FDEWIREVDV APDGTIRYDD FILRIVAK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.