Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | CDX86928 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | CDY00251 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | CDY00253 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026976.1-P | Field mustard | cytosol | 99.32 | 99.32 |
| CDY26556 | Canola | cytosol | 99.32 | 99.32 |
| CDY30070 | Canola | cytosol | 95.27 | 95.27 |
| CDX98074 | Canola | cytosol | 95.27 | 95.27 |
| AT1G12310.1 | Thale cress | cytosol | 93.92 | 93.92 |
| CDY21044 | Canola | cytosol | 93.24 | 93.24 |
| CDY31259 | Canola | cytosol | 93.24 | 93.24 |
| AT1G62820.1 | Thale cress | cytosol | 88.51 | 88.51 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 85.81 | 86.39 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 85.14 | 85.71 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 85.14 | 85.71 |
| PGSC0003DMT400070433 | Potato | cytosol | 83.78 | 84.35 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 84.46 | 83.33 |
| Solyc11g072270.1.1 | Tomato | cytosol | 83.78 | 79.49 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 74.32 | 74.32 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 74.32 | 74.32 |
| OQU79799 | Sorghum | cytosol | 73.65 | 73.65 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 73.65 | 73.65 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 73.65 | 73.65 |
| KRH04023 | Soybean | cytosol | 72.97 | 73.47 |
| Os08t0117400-01 | Rice | plasma membrane | 72.97 | 72.97 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 72.97 | 72.97 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 72.3 | 72.3 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 72.97 | 55.38 |
| CDY65072 | Canola | cytosol | 47.97 | 47.65 |
| CDX96148 | Canola | cytosol | 47.3 | 46.98 |
| CDY55678 | Canola | cytosol | 47.3 | 46.98 |
| CDX99690 | Canola | cytosol | 46.62 | 46.31 |
| CDY56411 | Canola | cytosol | 46.62 | 46.31 |
| CDY04474 | Canola | cytosol | 46.62 | 46.31 |
| CDX92401 | Canola | cytosol | 41.89 | 46.27 |
| CDY27651 | Canola | cytosol | 46.62 | 46.0 |
| CDY12321 | Canola | cytosol | 44.59 | 45.52 |
| CDY48191 | Canola | cytosol | 47.97 | 39.66 |
| CDX77060 | Canola | cytosol | 47.97 | 39.44 |
| CDX92965 | Canola | cytosol | 37.84 | 36.36 |
| CDY10686 | Canola | cytosol | 37.16 | 35.48 |
| CDY34215 | Canola | cytosol | 37.16 | 35.26 |
| CDX94883 | Canola | cytosol | 26.35 | 35.14 |
| CDY06478 | Canola | cytosol | 35.81 | 35.1 |
| CDX75970 | Canola | cytosol | 26.35 | 34.21 |
| CDY57144 | Canola | cytosol | 33.11 | 33.56 |
| CDY10325 | Canola | cytosol | 25.0 | 32.74 |
| CDY30947 | Canola | cytosol | 45.95 | 32.54 |
| CDY40824 | Canola | cytosol | 37.16 | 30.56 |
| CDY21220 | Canola | cytosol | 45.27 | 30.32 |
| CDY58544 | Canola | cytosol | 32.43 | 28.4 |
| CDY26151 | Canola | cytosol | 29.05 | 27.39 |
| CDX81878 | Canola | cytosol | 28.38 | 26.92 |
| CDY19221 | Canola | cytosol | 28.38 | 26.75 |
| CDY61824 | Canola | cytosol | 29.73 | 26.51 |
| CDY54677 | Canola | cytosol | 29.73 | 26.51 |
| CDY21702 | Canola | cytosol | 27.7 | 26.28 |
| CDX75623 | Canola | extracellular | 31.08 | 25.56 |
| CDY04172 | Canola | cytosol | 25.68 | 23.6 |
| CDY59874 | Canola | cytosol | 25.68 | 23.6 |
| CDY51605 | Canola | cytosol | 25.68 | 23.46 |
| CDY48076 | Canola | cytosol | 25.68 | 23.46 |
| CDX83123 | Canola | golgi | 29.05 | 22.51 |
| CDY62753 | Canola | cytosol | 29.73 | 22.0 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078FSA3 | UniProt:A0A078FSA3 | EnsemblPlants:CDY15991 | ProteinID:CDY15991 |
| ProteinID:CDY15991.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | EnsemblPlantsGene:GSBRNA2T00090376001 | InterPro:IPR002048 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EED15E |
Description
BnaC08g41320DBnaC08g41320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSA3]
Coordinates
chrLK032060:-:126960..127406
Molecular Weight (calculated)
16401.5 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.348
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDGLSDDQ VSSMKEAFTL FDTNGDGKIA PTELGILMRS LGGNPTQAQL KSITASENLT APFDFDRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FGEWIKEVDV GSDGKIKYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FGEWIKEVDV GSDGKIKYED FIARMVAK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.