Factsheet for GSMUA_Achr3P26750_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P18210_001
GSMUA_Achr5P13660_001
GSMUA_Achr5P20090_001
GSMUA_Achr8P11920_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12310.1	GSMUA_Achr11P...	AT5G62070.1	21798944
AT1G12310.1	GSMUA_Achr3P18210_001	AT5G62070.1	21798944
AT1G12310.1	GSMUA_Achr5P13660_001	AT5G62070.1	21798944
AT1G12310.1	GSMUA_Achr5P20090_001	AT5G62070.1	21798944
AT1G12310.1	GSMUA_Achr8P11920_001	AT5G62070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0117400-01	Rice	plasma membrane	84.46	84.46
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	82.43	82.43
Zm00001d049665_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	82.43	82.43
TraesCS7B01G217200.1	Wheat	cytosol, plastid	81.08	81.08
TraesCS7A01G316100.1	Wheat	cytosol, unclear	80.41	80.41
TraesCS7D01G313100.1	Wheat	cytosol	80.41	80.41
OQU79799	Sorghum	cytosol	79.73	79.73
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	77.03	77.55
VIT_02s0241g00140.t01	Wine grape	cytosol	77.03	77.55
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	76.35	76.87
CDY30070	Canola	cytosol	76.35	76.35
CDX98074	Canola	cytosol	76.35	76.35
CDY31259	Canola	cytosol	75.0	75.0
CDY26556	Canola	cytosol	75.0	75.0
CDY21044	Canola	cytosol	75.0	75.0
Bra026976.1-P	Field mustard	cytosol	75.0	75.0
Bra019756.1-P	Field mustard	cytosol	75.0	75.0
CDY15991	Canola	cytosol	74.32	74.32
AT1G12310.1	Thale cress	cytosol	74.32	74.32
PGSC0003DMT400070433	Potato	cytosol	72.3	72.79
Solyc03g083520.2.1	Tomato	cytosol, nucleus	72.97	72.0
AT1G62820.1	Thale cress	cytosol	71.62	71.62
Solyc11g072270.1.1	Tomato	cytosol	71.62	67.95
KRH04023	Soybean	cytosol	63.51	63.95
HORVU7Hr1G075240.1	Barley	cytosol, plastid	83.11	63.08
GSMUA_Achr11P...	Banana	cytosol	34.46	50.0
GSMUA_Achr6P23670_001	Banana	cytosol	47.97	47.65
GSMUA_Achr3P25040_001	Banana	cytosol	47.97	47.65
GSMUA_Achr3P09330_001	Banana	cytosol	47.97	47.65
GSMUA_Achr2P01120_001	Banana	cytosol	47.97	47.65
GSMUA_Achr10P...	Banana	cytosol, plasma membrane	47.97	47.65
GSMUA_Achr5P07820_001	Banana	cytosol	47.97	47.65
GSMUA_Achr6P15990_001	Banana	cytosol	47.3	46.98
GSMUA_Achr9P17280_001	Banana	cytosol	47.3	46.98
GSMUA_Achr10P...	Banana	cytosol	46.62	46.31
GSMUA_Achr5P27590_001	Banana	cytosol	34.46	43.97
GSMUA_Achr7P01390_001	Banana	cytosol	39.19	39.19
GSMUA_Achr4P22570_001	Banana	cytosol	37.84	37.84
GSMUA_AchrUn_...	Banana	cytosol	37.16	37.41
GSMUA_Achr2P12680_001	Banana	cytosol	36.49	36.49
GSMUA_Achr1P27230_001	Banana	cytosol	35.14	35.14
GSMUA_Achr1P04700_001	Banana	cytosol	35.14	35.14
GSMUA_Achr5P09010_001	Banana	cytosol	35.14	35.14
GSMUA_Achr6P24410_001	Banana	cytosol	35.14	34.9
GSMUA_Achr10P...	Banana	cytosol	41.22	32.45
GSMUA_Achr7P07720_001	Banana	cytosol	32.43	32.43
GSMUA_Achr10P...	Banana	cytosol	40.54	31.75
GSMUA_Achr9P21860_001	Banana	cytosol, mitochondrion	29.05	26.38
GSMUA_Achr6P10140_001	Banana	cytosol	29.05	26.38
GSMUA_Achr3P25390_001	Banana	cytosol	32.43	26.23
GSMUA_Achr1P25220_001	Banana	cytosol	27.03	24.54
GSMUA_Achr8P29750_001	Banana	cytosol, mitochondrion	26.35	23.78
GSMUA_Achr1P14070_001	Banana	cytosol	33.78	22.12
GSMUA_Achr8P05790_001	Banana	cytosol	20.95	12.65

Protein Annotations

EnsemblPlants:GSMUA_Achr3P26750_001	EnsemblPlants:GSMUA_Achr3T26750_001	EnsemblPlantsGene:GSMUA_Achr3G26750_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23050
PANTHER:PTHR23050:SF214	PFAM:PF13405	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000296EA24	UniProt:M0SI41	MapMan:35.1	:	:

Description

Probable calcium-binding protein CML7 [Source:GMGC_GENE;Acc:GSMUA_Achr3G26750_001]

Coordinates

chr3:+:26482349..26482795

Molecular Weight (calculated)

16747.9 Da

IEP (calculated)

4.321

GRAVY (calculated)

-0.304

Length

148 amino acids

Sequence
(BLAST)

001: MGKEELTEEQ VASMREAFTL FDADGDGRIA ASELGILMRS LGGNPTQAQL KEIAVSESLT APFDFPRFLD LMRKYLRPEP FDRQLRDAFR VLDKDATGTV
101: AVADLRHVLT SIGEKLEPDE FDEWIREVEV APDGTIHYED FILRMVAK

Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Arabidopsis Description

CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.