Factsheet for Zm00001d003064_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12516	Sorghum	nucleus	77.21	83.46
Zm00001d025864_P001	Maize	nucleus	78.57	83.39
VIT_05s0049g01010.t01	Wine grape	nucleus	36.73	75.0
Os04t0517100-01	Rice	nucleus	38.44	63.48
Zm00001d017268_P001	Maize	nucleus	49.66	59.84
Zm00001d051149_P001	Maize	nucleus	50.68	57.31
PGSC0003DMT400034263	Potato	mitochondrion	16.33	56.47
TraesCS2B01G399200.1	Wheat	nucleus	59.86	55.7
TraesCS2D01G378400.2	Wheat	nucleus	59.18	55.06
KRG97042	Soybean	nucleus	38.78	53.77
KRH68789	Soybean	nucleus	38.1	53.59
TraesCS2A01G381900.2	Wheat	nucleus	59.18	53.21
PGSC0003DMT400060168	Potato	nucleus	38.78	51.82
Solyc06g053610.2.1	Tomato	nucleus	46.6	51.7
KRH34142	Soybean	nucleus	36.39	50.95
PGSC0003DMT400042007	Potato	nucleus	46.26	50.75
VIT_05s0049g01020.t01	Wine grape	nucleus	43.54	50.59
Solyc05g055030.1.1	Tomato	nucleus	37.41	50.46
PGSC0003DMT400034878	Potato	nucleus	42.86	50.0
KRH32183	Soybean	nucleus	39.8	49.37
VIT_07s0005g03340.t01	Wine grape	nucleus	44.9	49.07
AT2G31180.1	Thale cress	nucleus	41.5	49.0
PGSC0003DMT400044362	Potato	nucleus	44.56	48.88
Solyc09g090130.2.1	Tomato	nucleus	44.56	48.88
Bra021708.1-P	Field mustard	nucleus	41.5	48.8
AT1G06180.1	Thale cress	nucleus	40.14	47.97
Bra022831.1-P	Field mustard	nucleus	40.14	47.97
KRH56057	Soybean	nucleus	25.85	47.5
KRH69121	Soybean	nucleus	42.52	47.35
KRH31704	Soybean	nucleus	42.18	46.97
Bra018267.1-P	Field mustard	nucleus	40.14	46.64
Solyc03g005570.2.1	Tomato	nucleus	39.8	46.61
KRH22481	Soybean	nucleus	35.03	45.37
Bra015481.1-P	Field mustard	nucleus	38.78	45.24
KRG92419	Soybean	nucleus	41.16	44.49
Zm00001d032694_P001	Maize	nucleus	41.16	44.49
KRH34387	Soybean	nucleus	41.5	44.36
KRG95664	Soybean	nucleus	43.54	43.99
Solyc06g083900.2.1	Tomato	nucleus	38.1	43.92
KRH67378	Soybean	nucleus	43.54	43.54
PGSC0003DMT400051682	Potato	nucleus	37.76	43.02
Zm00001d014029_P001	Maize	nucleus	40.48	42.81
KRH56060	Soybean	nucleus	33.33	42.61
KRH25458	Soybean	nucleus	32.31	40.6
Solyc07g054960.1.1	Tomato	nucleus	29.25	39.81
VIT_12s0134g00480.t01	Wine grape	nucleus	34.35	39.3
PGSC0003DMT400097096	Potato	nucleus	28.23	38.97
KRH56061	Soybean	nucleus	31.97	38.84
PGSC0003DMT400067321	Potato	nucleus	32.31	38.78
PGSC0003DMT400035748	Potato	nucleus	30.27	38.53
PGSC0003DMT400067318	Potato	nucleus	31.63	38.27
Solyc03g093940.1.1	Tomato	nucleus	27.89	37.79
Solyc12g005640.1.1	Tomato	nucleus	29.93	37.77
Solyc07g053230.2.1	Tomato	nucleus	31.97	37.45
PGSC0003DMT400067322	Potato	nucleus	30.95	37.14
PGSC0003DMT400097604	Potato	nucleus	26.19	36.67
PGSC0003DMT400039029	Potato	nucleus	30.27	36.63
Solyc07g053240.2.1	Tomato	nucleus	30.95	36.55
VIT_12s0134g00490.t01	Wine grape	nucleus	30.95	36.11
Solyc07g055000.1.1	Tomato	nucleus	29.59	35.95
KRH56056	Soybean	nucleus	28.23	35.32
KRH26874	Soybean	nucleus	29.93	35.06
KRH25468	Soybean	nucleus	27.89	35.04
Solyc06g033870.1.1	Tomato	nucleus	29.25	34.82
VIT_00s0203g00170.t01	Wine grape	nucleus	31.63	34.7
Solyc06g034000.1.1	Tomato	nucleus	27.21	33.9
Zm00001d026204_P001	Maize	nucleus	37.41	33.43
PGSC0003DMT400093355	Potato	nucleus	27.21	33.2
Zm00001d051520_P001	Maize	nucleus	38.1	32.94
Solyc03g093930.2.1	Tomato	nucleus	27.21	32.65
PGSC0003DMT400051513	Potato	nucleus	26.87	31.98
PGSC0003DMT400070912	Potato	nucleus	28.23	31.92
PGSC0003DMT400051510	Potato	nucleus	26.19	31.69
Solyc03g093890.2.1	Tomato	nucleus	26.87	31.23
KRH56059	Soybean	nucleus	33.67	30.56
KRH25461	Soybean	nucleus	31.29	30.16
PGSC0003DMT400021498	Potato	nucleus	24.49	30.0
KRH26875	Soybean	nucleus	31.29	29.39
Zm00001d026203_P001	Maize	nucleus	38.1	29.32
KRH56058	Soybean	nucleus	31.29	28.93
Zm00001d002476_P001	Maize	nucleus	39.46	28.64
PGSC0003DMT400086165	Potato	nucleus	27.89	28.57
KRH25459	Soybean	nucleus	29.25	28.57
PGSC0003DMT400021503	Potato	nucleus	15.99	24.48
PGSC0003DMT400021501	Potato	nucleus	16.33	24.37
Solyc07g054980.1.1	Tomato	nucleus	33.67	21.15
CDX73801	Canola	nucleus	1.02	4.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:541733	UniProt:A0A1D6E683	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONM15974.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF695	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001E23EFB	EnsemblPlantsGene:Zm00001d003064	EnsemblPlants:Zm00001d003064_P001	EnsemblPlants:Zm00001d003064_T001	SEG:seg

Description

MYB-transcription factor 72R2R3MYB-domain protein

Coordinates

chr2:-:30987718..30989878

Molecular Weight (calculated)

31784.8 Da

IEP (calculated)

5.408

GRAVY (calculated)

-0.682

Length

294 amino acids

Sequence
(BLAST)

001: MGRAPCCEKM GLKKGPWTPE EDKVLVAHIQ SFGHSNWRAL PKQAGLLRCG KSCRLRWINY LRPDIKRGNF SKEEEDAIIS LHEQLGNRWS AIAARLPGRT
101: DNEIKNVWHT HLKKRLDPTK QEQQQQHGTT PAAGAGKKHR PAAAAKRGGG GARKATANAD AVVVPAPAPA TAAPASPERS AASSSVTESS MTEQEQEHGN
201: TGSSPAFPKE ESLTTSSSDA EEFQFDDSFW SETLSMPLDS LDDVVPMEPS DDDAFGDVDV AAASSSSVGA DGDLDYWLRV FMESGDAHPE LPQI

Best Arabidopsis Sequence Match ( AT3G23250.1 )
(BLAST)

001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL

Arabidopsis Description

MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.