Factsheet for Os04t0517100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	Os01t0267900-01	AT2G41090.1	17360592
AT2G31180.1	Os01t0279300-01	AT2G41090.1	17360592
AT2G31180.1	Os01t0810300-01	AT2G41090.1	17360592
AT2G31180.1	Os03t0319300-01	AT2G41090.1	17360592
AT2G31180.1	Os05t0491000-01	AT2G41090.1	17360592
AT2G31180.1	Os05t0491100-01	AT2G41090.1	17360592
AT2G31180.1	Os07t0687200-02	AT2G41090.1	17360592
AT2G31180.1	Os12t0603800-00	AT2G41090.1	17360592
AT2G31180.1	Os01t0267900-01	AT2G41100.1	17360592
AT2G31180.1	Os01t0279300-01	AT2G41100.1	17360592
AT2G31180.1	Os01t0810300-01	AT2G41100.1	17360592
AT2G31180.1	Os03t0319300-01	AT2G41100.1	17360592
AT2G31180.1	Os05t0491000-01	AT2G41100.1	17360592
AT2G31180.1	Os05t0491100-01	AT2G41100.1	17360592
AT2G31180.1	Os07t0687200-02	AT2G41100.1	17360592
AT2G31180.1	Os12t0603800-00	AT2G41100.1	17360592
AT2G31180.1	Os03t0743500-02	AT4G14640.1	17360592
AT2G31180.1	Os01t0267900-01	AT5G21274.1	17360592
AT2G31180.1	Os01t0279300-01	AT5G21274.1	17360592
AT2G31180.1	Os01t0810300-01	AT5G21274.1	17360592
AT2G31180.1	Os03t0319300-01	AT5G21274.1	17360592
AT2G31180.1	Os05t0491000-01	AT5G21274.1	17360592
AT2G31180.1	Os05t0491100-01	AT5G21274.1	17360592
AT2G31180.1	Os07t0687200-02	AT5G21274.1	17360592
AT2G31180.1	Os12t0603800-00	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12516	Sorghum	nucleus	60.67	39.71
Zm00001d003064_P001	Maize	nucleus	63.48	38.44
Zm00001d025864_P001	Maize	nucleus	58.99	37.91
Os02t0624300-01	Rice	nucleus	46.63	32.17
TraesCS2B01G399200.1	Wheat	nucleus	55.06	31.01
TraesCS2D01G378400.2	Wheat	nucleus	54.49	30.7
TraesCS2A01G381900.2	Wheat	nucleus	54.49	29.66
VIT_05s0049g01010.t01	Wine grape	nucleus	22.47	27.78
PGSC0003DMT400034263	Potato	mitochondrion	12.92	27.06
PGSC0003DMT400034878	Potato	nucleus	35.39	25.0
VIT_05s0049g01020.t01	Wine grape	nucleus	35.39	24.9
Solyc06g053610.2.1	Tomato	nucleus	35.96	24.15
Solyc03g005570.2.1	Tomato	nucleus	33.71	23.9
PGSC0003DMT400042007	Potato	nucleus	35.96	23.88
Solyc09g090130.2.1	Tomato	nucleus	34.83	23.13
AT1G06180.1	Thale cress	nucleus	31.46	22.76
PGSC0003DMT400044362	Potato	nucleus	34.27	22.76
PGSC0003DMT400060168	Potato	nucleus	27.53	22.27
KRG97042	Soybean	nucleus	26.4	22.17
KRH69121	Soybean	nucleus	32.58	21.97
VIT_07s0005g03340.t01	Wine grape	nucleus	33.15	21.93
Os10t0478300-01	Rice	nucleus	33.15	21.38
KRH31704	Soybean	nucleus	31.46	21.21
Bra021708.1-P	Field mustard	nucleus	29.78	21.2
Solyc05g055030.1.1	Tomato	nucleus	25.84	21.1
KRH68789	Soybean	nucleus	24.72	21.05
KRG95664	Soybean	nucleus	34.27	20.96
AT2G31180.1	Thale cress	nucleus	29.21	20.88
KRH67378	Soybean	nucleus	34.27	20.75
Bra015481.1-P	Field mustard	nucleus	29.21	20.63
KRG92419	Soybean	nucleus	31.46	20.59
Solyc06g083900.2.1	Tomato	nucleus	29.21	20.39
KRH34387	Soybean	nucleus	31.46	20.36
Bra022831.1-P	Field mustard	nucleus	28.09	20.33
KRH32183	Soybean	nucleus	26.97	20.25
PGSC0003DMT400051682	Potato	nucleus	29.21	20.16
KRH34142	Soybean	nucleus	23.6	20.0
Bra018267.1-P	Field mustard	nucleus	27.53	19.37
KRH56060	Soybean	nucleus	21.91	16.96
Solyc06g034000.1.1	Tomato	nucleus	22.47	16.95
KRH22481	Soybean	nucleus	21.35	16.74
KRH25458	Soybean	nucleus	21.91	16.67
PGSC0003DMT400035748	Potato	nucleus	21.35	16.45
PGSC0003DMT400067321	Potato	nucleus	22.47	16.33
Solyc12g005640.1.1	Tomato	nucleus	21.35	16.31
VIT_12s0134g00480.t01	Wine grape	nucleus	23.03	15.95
PGSC0003DMT400021501	Potato	nucleus	17.42	15.74
KRH56061	Soybean	nucleus	21.35	15.7
VIT_00s0203g00170.t01	Wine grape	nucleus	23.6	15.67
Solyc03g093940.1.1	Tomato	nucleus	19.1	15.67
PGSC0003DMT400039029	Potato	nucleus	21.35	15.64
PGSC0003DMT400051510	Potato	nucleus	21.35	15.64
PGSC0003DMT400021503	Potato	nucleus	16.85	15.62
Solyc07g053230.2.1	Tomato	nucleus	21.91	15.54
VIT_12s0134g00490.t01	Wine grape	nucleus	21.91	15.48
PGSC0003DMT400051513	Potato	nucleus	21.35	15.38
Solyc06g033870.1.1	Tomato	nucleus	21.35	15.38
KRH56056	Soybean	nucleus	20.22	15.32
PGSC0003DMT400067318	Potato	nucleus	20.79	15.23
KRH26874	Soybean	nucleus	21.35	15.14
PGSC0003DMT400067322	Potato	nucleus	20.79	15.1
KRH25459	Soybean	nucleus	24.72	14.62
PGSC0003DMT400097096	Potato	nucleus	17.42	14.55
KRH25468	Soybean	nucleus	19.1	14.53
Solyc07g055000.1.1	Tomato	nucleus	19.66	14.46
KRH56057	Soybean	nucleus	12.92	14.38
PGSC0003DMT400070912	Potato	nucleus	20.79	14.23
PGSC0003DMT400093355	Potato	nucleus	19.1	14.11
Solyc07g054960.1.1	Tomato	nucleus	16.85	13.89
Solyc07g053240.2.1	Tomato	nucleus	19.1	13.65
KRH25461	Soybean	nucleus	23.03	13.44
Solyc03g093930.2.1	Tomato	nucleus	17.98	13.06
KRH56059	Soybean	nucleus	23.6	12.96
PGSC0003DMT400021498	Potato	nucleus	17.42	12.92
KRH56058	Soybean	nucleus	23.03	12.89
Solyc03g093890.2.1	Tomato	nucleus	17.98	12.65
PGSC0003DMT400097604	Potato	nucleus	14.61	12.38
Os04t0594100-01	Rice	nucleus	25.28	12.13
Os02t0695200-01	Rice	nucleus	23.03	12.06
KRH26875	Soybean	nucleus	19.66	11.18
PGSC0003DMT400086165	Potato	nucleus	15.73	9.76
CDX73801	Canola	nucleus	3.37	8.96
Solyc07g054980.1.1	Tomato	nucleus	23.03	8.76

Protein Annotations

EnsemblPlants:Os04t0517100-01	EnsemblPlantsGene:Os04g0517100	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF533	PFAM:PF00249	PFscan:PS51294	ProteinID:BAS90093.1	SEG:seg	SUPFAM:SSF46689
UniParc:UPI000393BE7F	UniProt:A0A0P0WCK0	MapMan:35.1	:	:	:

Description

Myb transcription factor 4, myb transcription factor 8, transcription factor MYB8Similar to OSIGBa0145M07.4 protein. (Os04t0517100-01)

Coordinates

chr4:-:25843041..25844875

Molecular Weight (calculated)

18734.6 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.465

Length

178 amino acids

Sequence
(BLAST)

001: SALNSVLRRW SAIAARLPGR TDNEIKNVWH THLKKRLDAP AQGGHVAASG GKKHKKPKSA KKPAAAAAAP PASPERSASS SVTESSMASS VAEEHGNAGI
101: SSASASVCAK EESSFTSASE EFQIDDSFWS ETLSMPLDGY DVSMEPGDAF VAPPSADDMD YWLGVFMESG EAQDLPQI

Best Arabidopsis Sequence Match ( AT1G16490.2 )
(BLAST)

001: MSCCGLKVLI LTIAFLHFGF RWSKIASKLP GRTDNEIKNV WHTHLKKRLS SETNLNADEA GSKGSLNEEE NSQESSPNAS MSFAGSNISS KDDDAQISQM
101: FEHILTYSEF TGMLQEVDKP ELLEMPFDLD PDIWSFIDGS DSFQQPENRA LQESEEDEVD KWFKHLESEL GLEENDNQQQ QQQHKQGTED EHSSSLLESY
201: ELLIH

Arabidopsis Description

MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.