Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G378400.2 | Wheat | nucleus | 85.13 | 85.13 |
| TraesCS2A01G381900.2 | Wheat | nucleus | 83.86 | 81.04 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 34.18 | 75.0 |
| EES12516 | Sorghum | nucleus | 53.48 | 62.13 |
| TraesCS6B01G257300.1 | Wheat | nucleus | 49.05 | 61.26 |
| Zm00001d025864_P001 | Maize | nucleus | 53.48 | 61.01 |
| TraesCS6B01G257000.1 | Wheat | nucleus | 46.52 | 60.49 |
| Zm00001d003064_P001 | Maize | nucleus | 55.7 | 59.86 |
| TraesCS6B01G257100.1 | Wheat | nucleus | 47.47 | 59.52 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 47.47 | 59.06 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 15.51 | 57.65 |
| Os04t0517100-01 | Rice | nucleus | 31.01 | 55.06 |
| PGSC0003DMT400060168 | Potato | nucleus | 36.08 | 51.82 |
| AT1G06180.1 | Thale cress | nucleus | 40.19 | 51.63 |
| Solyc05g055030.1.1 | Tomato | nucleus | 35.44 | 51.38 |
| KRG97042 | Soybean | nucleus | 34.18 | 50.94 |
| KRH68789 | Soybean | nucleus | 33.23 | 50.24 |
| PGSC0003DMT400034878 | Potato | nucleus | 39.87 | 50.0 |
| Solyc09g090130.2.1 | Tomato | nucleus | 42.09 | 49.63 |
| Bra015481.1-P | Field mustard | nucleus | 39.56 | 49.6 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 42.09 | 49.44 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 39.56 | 49.41 |
| PGSC0003DMT400044362 | Potato | nucleus | 41.77 | 49.25 |
| AT2G31180.1 | Thale cress | nucleus | 38.29 | 48.59 |
| Bra021708.1-P | Field mustard | nucleus | 38.29 | 48.4 |
| PGSC0003DMT400042007 | Potato | nucleus | 40.82 | 48.13 |
| KRH56057 | Soybean | nucleus | 24.37 | 48.12 |
| KRH32183 | Soybean | nucleus | 36.08 | 48.1 |
| Solyc06g053610.2.1 | Tomato | nucleus | 40.19 | 47.92 |
| Solyc03g005570.2.1 | Tomato | nucleus | 37.97 | 47.81 |
| Bra018267.1-P | Field mustard | nucleus | 37.66 | 47.04 |
| KRH69121 | Soybean | nucleus | 39.24 | 46.97 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 38.61 | 46.92 |
| Bra022831.1-P | Field mustard | nucleus | 36.39 | 46.75 |
| KRH34142 | Soybean | nucleus | 31.01 | 46.67 |
| KRH31704 | Soybean | nucleus | 38.92 | 46.59 |
| KRH34387 | Soybean | nucleus | 40.19 | 46.18 |
| KRG92419 | Soybean | nucleus | 39.24 | 45.59 |
| KRG95664 | Soybean | nucleus | 40.19 | 43.64 |
| Solyc06g083900.2.1 | Tomato | nucleus | 35.13 | 43.53 |
| KRH67378 | Soybean | nucleus | 39.87 | 42.86 |
| PGSC0003DMT400051682 | Potato | nucleus | 34.81 | 42.64 |
| KRH56060 | Soybean | nucleus | 30.38 | 41.74 |
| KRH22481 | Soybean | nucleus | 29.43 | 40.97 |
| KRH25458 | Soybean | nucleus | 29.75 | 40.17 |
| KRH56061 | Soybean | nucleus | 30.7 | 40.08 |
| Solyc07g054960.1.1 | Tomato | nucleus | 26.9 | 39.35 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 31.96 | 39.3 |
| PGSC0003DMT400097096 | Potato | nucleus | 26.27 | 38.97 |
| Solyc12g005640.1.1 | Tomato | nucleus | 28.48 | 38.63 |
| PGSC0003DMT400035748 | Potato | nucleus | 28.16 | 38.53 |
| KRH25468 | Soybean | nucleus | 27.53 | 37.18 |
| PGSC0003DMT400097604 | Potato | nucleus | 24.37 | 36.67 |
| KRH56056 | Soybean | nucleus | 27.22 | 36.6 |
| PGSC0003DMT400067321 | Potato | nucleus | 28.16 | 36.33 |
| PGSC0003DMT400067318 | Potato | nucleus | 27.85 | 36.21 |
| PGSC0003DMT400067322 | Potato | nucleus | 27.85 | 35.92 |
| Solyc03g093940.1.1 | Tomato | nucleus | 24.37 | 35.48 |
| Solyc07g053230.2.1 | Tomato | nucleus | 28.16 | 35.46 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 27.85 | 34.92 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 36.39 | 34.74 |
| KRH26874 | Soybean | nucleus | 27.53 | 34.66 |
| Solyc06g033870.1.1 | Tomato | nucleus | 26.9 | 34.41 |
| Solyc07g055000.1.1 | Tomato | nucleus | 26.27 | 34.3 |
| PGSC0003DMT400039029 | Potato | nucleus | 26.27 | 34.16 |
| PGSC0003DMT400093355 | Potato | nucleus | 25.95 | 34.02 |
| Solyc07g053240.2.1 | Tomato | nucleus | 26.58 | 33.73 |
| Solyc06g034000.1.1 | Tomato | nucleus | 25.0 | 33.47 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 28.16 | 33.21 |
| TraesCS2B01G466500.1 | Wheat | nucleus | 37.66 | 32.96 |
| TraesCS2B01G466400.1 | Wheat | nucleus | 36.39 | 32.39 |
| Solyc03g093930.2.1 | Tomato | nucleus | 25.0 | 32.24 |
| PGSC0003DMT400051513 | Potato | nucleus | 24.68 | 31.58 |
| PGSC0003DMT400070912 | Potato | nucleus | 25.63 | 31.15 |
| PGSC0003DMT400051510 | Potato | nucleus | 23.73 | 30.86 |
| KRH25461 | Soybean | nucleus | 29.43 | 30.49 |
| Solyc03g093890.2.1 | Tomato | nucleus | 24.37 | 30.43 |
| PGSC0003DMT400021498 | Potato | nucleus | 22.78 | 30.0 |
| KRH56059 | Soybean | nucleus | 30.38 | 29.63 |
| KRH26875 | Soybean | nucleus | 29.11 | 29.39 |
| PGSC0003DMT400086165 | Potato | nucleus | 26.58 | 29.27 |
| KRH56058 | Soybean | nucleus | 29.43 | 29.25 |
| KRH25459 | Soybean | nucleus | 27.22 | 28.57 |
| PGSC0003DMT400021503 | Potato | nucleus | 15.82 | 26.04 |
| PGSC0003DMT400021501 | Potato | nucleus | 16.14 | 25.89 |
| Solyc07g054980.1.1 | Tomato | nucleus | 28.48 | 19.23 |
| CDX73801 | Canola | nucleus | 1.58 | 7.46 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 | InterPro:Myb-like_dom | InterPro:Myb_dom | PFAM:PF00249 |
| PFscan:PS50090 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF533 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2B01G399200 | EnsemblPlants:TraesCS2B01G399200.1 | TIGR:cd00167 | SEG:seg |
Description
No Description!
Coordinates
chr2B:+:567034691..567036181
Molecular Weight (calculated)
34969.6 Da
IEP (calculated)
7.579
GRAVY (calculated)
-0.522
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKM GLKRGPWTPE EDKILVAHIH SHGHGNWRAL PKQAGLLRCG KSCRLRWINY LRPDIKRGNF TDEEEQSIIQ LHQLLGNRCL LLLVAFFLLL
101: LNHILTVPLL LKRGQSLPLA SIAKQRWSAI AARLPGRTDN EIKNVWHTHL KKRLDPSAQE QHEEAKKRKK PAAAARKRDG KVKMRKLDAL TAKAAPVLSS
201: PERSVSSTVT ESTSTASAAA EQHGNSGSSA SASASVKEEC FTSSEESEEF QIDESFWSET LSMPLDDIND VCMEPHDAFG KPTGAADGDM DYWLKVFMEG
301: GGDDDNNNGA LDLPQI
101: LNHILTVPLL LKRGQSLPLA SIAKQRWSAI AARLPGRTDN EIKNVWHTHL KKRLDPSAQE QHEEAKKRKK PAAAARKRDG KVKMRKLDAL TAKAAPVLSS
201: PERSVSSTVT ESTSTASAAA EQHGNSGSSA SASASVKEEC FTSSEESEEF QIDESFWSET LSMPLDDIND VCMEPHDAFG KPTGAADGDM DYWLKVFMEG
301: GGDDDNNNGA LDLPQI
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.