Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G378400.2 | Wheat | nucleus | 85.63 | 88.61 |
| TraesCS2B01G399200.1 | Wheat | nucleus | 81.04 | 83.86 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 33.33 | 75.69 |
| EES12516 | Sorghum | nucleus | 51.38 | 61.76 |
| TraesCS6A01G224100.1 | Wheat | nucleus | 47.71 | 60.7 |
| Zm00001d025864_P001 | Maize | nucleus | 51.38 | 60.65 |
| TraesCS6A01G224000.1 | Wheat | nucleus | 46.79 | 59.77 |
| TraesCS6A01G224400.1 | Wheat | nucleus | 44.04 | 59.75 |
| TraesCS6A01G224300.1 | Wheat | nucleus | 45.57 | 59.6 |
| Zm00001d003064_P001 | Maize | nucleus | 53.21 | 59.18 |
| TraesCS6A01G224200.1 | Wheat | nucleus | 45.26 | 58.5 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 14.98 | 57.65 |
| Os04t0517100-01 | Rice | nucleus | 29.66 | 54.49 |
| PGSC0003DMT400060168 | Potato | nucleus | 34.86 | 51.82 |
| Solyc05g055030.1.1 | Tomato | nucleus | 34.25 | 51.38 |
| AT1G06180.1 | Thale cress | nucleus | 38.53 | 51.22 |
| KRG97042 | Soybean | nucleus | 32.42 | 50.0 |
| Solyc09g090130.2.1 | Tomato | nucleus | 40.67 | 49.63 |
| Bra015481.1-P | Field mustard | nucleus | 38.23 | 49.6 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 40.67 | 49.44 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 38.23 | 49.41 |
| KRH68789 | Soybean | nucleus | 31.5 | 49.28 |
| PGSC0003DMT400044362 | Potato | nucleus | 40.37 | 49.25 |
| PGSC0003DMT400034878 | Potato | nucleus | 37.92 | 49.21 |
| AT2G31180.1 | Thale cress | nucleus | 37.0 | 48.59 |
| Bra021708.1-P | Field mustard | nucleus | 37.0 | 48.4 |
| KRH56057 | Soybean | nucleus | 23.55 | 48.12 |
| KRH32183 | Soybean | nucleus | 34.86 | 48.1 |
| Solyc06g053610.2.1 | Tomato | nucleus | 38.84 | 47.92 |
| PGSC0003DMT400042007 | Potato | nucleus | 39.14 | 47.76 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 38.23 | 47.53 |
| Bra018267.1-P | Field mustard | nucleus | 36.39 | 47.04 |
| Solyc03g005570.2.1 | Tomato | nucleus | 36.09 | 47.01 |
| KRH69121 | Soybean | nucleus | 37.92 | 46.97 |
| Bra022831.1-P | Field mustard | nucleus | 35.17 | 46.75 |
| KRH34142 | Soybean | nucleus | 29.97 | 46.67 |
| KRH31704 | Soybean | nucleus | 37.61 | 46.59 |
| KRH34387 | Soybean | nucleus | 38.84 | 46.18 |
| KRG92419 | Soybean | nucleus | 37.61 | 45.22 |
| KRG95664 | Soybean | nucleus | 38.84 | 43.64 |
| Solyc06g083900.2.1 | Tomato | nucleus | 33.64 | 43.14 |
| KRH67378 | Soybean | nucleus | 38.53 | 42.86 |
| PGSC0003DMT400051682 | Potato | nucleus | 33.33 | 42.25 |
| KRH56060 | Soybean | nucleus | 29.66 | 42.17 |
| KRH22481 | Soybean | nucleus | 28.44 | 40.97 |
| KRH25458 | Soybean | nucleus | 29.05 | 40.6 |
| TraesCS6A01G265300.1 | Wheat | nucleus | 32.42 | 40.46 |
| KRH56061 | Soybean | nucleus | 29.66 | 40.08 |
| Solyc07g054960.1.1 | Tomato | nucleus | 25.99 | 39.35 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 30.89 | 39.3 |
| PGSC0003DMT400097096 | Potato | nucleus | 25.38 | 38.97 |
| Solyc12g005640.1.1 | Tomato | nucleus | 27.52 | 38.63 |
| PGSC0003DMT400035748 | Potato | nucleus | 27.22 | 38.53 |
| KRH25468 | Soybean | nucleus | 26.61 | 37.18 |
| PGSC0003DMT400097604 | Potato | nucleus | 23.55 | 36.67 |
| KRH56056 | Soybean | nucleus | 26.3 | 36.6 |
| PGSC0003DMT400067321 | Potato | nucleus | 27.22 | 36.33 |
| PGSC0003DMT400067318 | Potato | nucleus | 26.91 | 36.21 |
| PGSC0003DMT400067322 | Potato | nucleus | 26.91 | 35.92 |
| Solyc03g093940.1.1 | Tomato | nucleus | 23.55 | 35.48 |
| Solyc07g053230.2.1 | Tomato | nucleus | 27.22 | 35.46 |
| KRH26874 | Soybean | nucleus | 26.91 | 35.06 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 26.91 | 34.92 |
| Solyc06g033870.1.1 | Tomato | nucleus | 25.99 | 34.41 |
| Solyc07g055000.1.1 | Tomato | nucleus | 25.38 | 34.3 |
| PGSC0003DMT400039029 | Potato | nucleus | 25.38 | 34.16 |
| PGSC0003DMT400093355 | Potato | nucleus | 25.08 | 34.02 |
| Solyc07g053240.2.1 | Tomato | nucleus | 25.69 | 33.73 |
| Solyc06g034000.1.1 | Tomato | nucleus | 24.16 | 33.47 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 26.91 | 32.84 |
| Solyc03g093930.2.1 | Tomato | nucleus | 24.16 | 32.24 |
| TraesCS2A01G445500.1 | Wheat | nucleus | 35.78 | 31.88 |
| PGSC0003DMT400051513 | Potato | nucleus | 23.85 | 31.58 |
| PGSC0003DMT400070912 | Potato | nucleus | 24.77 | 31.15 |
| PGSC0003DMT400051510 | Potato | nucleus | 22.94 | 30.86 |
| Solyc03g093890.2.1 | Tomato | nucleus | 23.85 | 30.83 |
| KRH25461 | Soybean | nucleus | 28.44 | 30.49 |
| PGSC0003DMT400021498 | Potato | nucleus | 22.02 | 30.0 |
| KRH56059 | Soybean | nucleus | 29.36 | 29.63 |
| KRH26875 | Soybean | nucleus | 28.13 | 29.39 |
| PGSC0003DMT400086165 | Potato | nucleus | 25.69 | 29.27 |
| KRH56058 | Soybean | nucleus | 28.44 | 29.25 |
| KRH25459 | Soybean | nucleus | 26.3 | 28.57 |
| PGSC0003DMT400021503 | Potato | nucleus | 15.29 | 26.04 |
| PGSC0003DMT400021501 | Potato | nucleus | 15.6 | 25.89 |
| Solyc07g054980.1.1 | Tomato | nucleus | 27.52 | 19.23 |
| CDX73801 | Canola | nucleus | 1.53 | 7.46 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G381900.2 | EnsemblPlantsGene:TraesCS2A01G381900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF533 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:625243297..625244833
Molecular Weight (calculated)
36050.6 Da
IEP (calculated)
7.757
GRAVY (calculated)
-0.678
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKM GLKRGPWTPE EDKILVAHIH SHGHGNWRAL PKQAGEPLPP SLPPSLRPSA SQTHLRRLLS PSLARRRAAA PRSVPDLRCP CCFAGLLRCG
101: KSCRLRWINY LRPDIKRGNF TDEEEQSIIQ LHQLLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLDPGA QEQLEEASAA KKRKKPAAAA RKREGKIKMR
201: KLDALTAKAA PVLSSPDRSV SSTLTESTST ASAAEEQHGN SGSSASASAS VKEECFTSSE ESEEFQIDES FWSETLSMPL DDINDVCMEP HDAFGKPADG
301: DMDYWLKVFM EGGGDDNNDG ALDLPQI
101: KSCRLRWINY LRPDIKRGNF TDEEEQSIIQ LHQLLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLDPGA QEQLEEASAA KKRKKPAAAA RKREGKIKMR
201: KLDALTAKAA PVLSSPDRSV SSTLTESTST ASAAEEQHGN SGSSASASAS VKEECFTSSE ESEEFQIDES FWSETLSMPL DDINDVCMEP HDAFGKPADG
301: DMDYWLKVFM EGGGDDNNDG ALDLPQI
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.