Factsheet for VIT_07s0005g03340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G31180.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G31180.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G31180.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G31180.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G31180.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G31180.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18180_001	Banana	nucleus	41.64	76.71
VIT_05s0049g01010.t01	Wine grape	nucleus	37.17	69.44
GSMUA_Achr4P21910_001	Banana	nucleus	46.47	57.08
CDY15424	Canola	nucleus	46.84	57.01
GSMUA_Achr5P03920_001	Banana	nucleus	49.44	55.42
GSMUA_Achr1P09180_001	Banana	nucleus	46.84	54.78
VIT_05s0049g01020.t01	Wine grape	nucleus	51.3	54.55
GSMUA_Achr11P...	Banana	nucleus	47.58	54.47
GSMUA_Achr5P14600_001	Banana	nucleus	46.1	54.15
TraesCS6D01G210500.1	Wheat	nucleus	47.96	53.75
TraesCS6D01G211200.1	Wheat	nucleus	48.7	53.69
TraesCS6A01G224300.1	Wheat	nucleus	49.44	53.2
HORVU6Hr1G058580.1	Barley	nucleus	47.96	53.09
TraesCS6D01G211100.1	Wheat	nucleus	49.44	52.99
CDY57089	Canola	nucleus	49.07	52.8
Bra021708.1-P	Field mustard	nucleus	49.07	52.8
PGSC0003DMT400034878	Potato	nucleus	49.44	52.78
TraesCS6B01G257000.1	Wheat	nucleus	47.58	52.67
TraesCS6B01G257300.1	Wheat	nucleus	49.44	52.57
TraesCS6D01G210900.1	Wheat	nucleus	47.21	52.48
HORVU6Hr1G058640.1	Barley	nucleus	47.58	52.46
AT1G06180.1	Thale cress	nucleus	47.96	52.44
TraesCS6A01G224400.1	Wheat	nucleus	46.84	52.28
Zm00001d017268_P001	Maize	nucleus	47.21	52.05
TraesCS6D01G211400.1	Wheat	nucleus	49.07	51.97
Os02t0624300-01	Rice	nucleus	49.81	51.94
CDY70982	Canola	nucleus	48.7	51.78
Bra018267.1-P	Field mustard	nucleus	48.7	51.78
TraesCS6B01G257100.1	Wheat	nucleus	48.33	51.59
TraesCS6A01G224000.1	Wheat	nucleus	49.07	51.56
PGSC0003DMT400044362	Potato	nucleus	51.3	51.49
AT2G31180.1	Thale cress	nucleus	47.58	51.41
TraesCS6A01G224100.1	Wheat	nucleus	49.07	51.36
TraesCS6B01G257200.1	Wheat	nucleus	48.33	51.18
EES07173	Sorghum	nucleus	49.07	51.16
Solyc09g090130.2.1	Tomato	nucleus	50.93	51.12
TraesCS6A01G224200.1	Wheat	nucleus	47.96	50.99
Solyc06g053610.2.1	Tomato	nucleus	50.19	50.94
CDX84795	Canola	nucleus	46.47	50.81
PGSC0003DMT400042007	Potato	nucleus	50.56	50.75
Solyc03g005570.2.1	Tomato	nucleus	47.21	50.6
Bra022831.1-P	Field mustard	nucleus	46.1	50.41
CDY47723	Canola	nucleus	46.84	50.0
CDY10182	Canola	nucleus	46.47	50.0
CDY23952	Canola	nucleus	45.72	50.0
Bra015481.1-P	Field mustard	nucleus	46.84	50.0
TraesCS6D01G210800.1	Wheat	nucleus	40.52	49.77
EES12516	Sorghum	nucleus	49.44	48.9
KRH67378	Soybean	nucleus	52.04	47.62
KRG95664	Soybean	nucleus	51.3	47.42
Zm00001d051149_P001	Maize	nucleus	45.72	47.31
Zm00001d025864_P001	Maize	nucleus	48.7	47.29
KRH32183	Soybean	nucleus	41.64	47.26
HORVU6Hr1G058630.3	Barley	nucleus, plastid	50.19	46.39
Zm00001d003064_P001	Maize	nucleus	49.07	44.9
Zm00001d032694_P001	Maize	nucleus	44.98	44.49
TraesCS1D01G154000.1	Wheat	nucleus	42.75	43.73
TraesCS1A01G155300.1	Wheat	nucleus	42.75	43.73
Os10t0478300-01	Rice	nucleus	44.61	43.48
HORVU6Hr1G058620.1	Barley	nucleus	46.84	43.45
TraesCS1B01G172500.1	Wheat	nucleus	41.26	42.69
TraesCS2B01G399200.1	Wheat	nucleus	49.44	42.09
Zm00001d014029_P001	Maize	nucleus	43.49	42.09
VIT_12s0134g00480.t01	Wine grape	nucleus	39.78	41.63
EER91482	Sorghum	nucleus	45.72	41.55
TraesCS2D01G378400.2	Wheat	nucleus	48.33	41.14
TraesCS2A01G381900.2	Wheat	nucleus	49.44	40.67
GSMUA_Achr6P31520_001	Banana	nucleus	36.43	40.16
GSMUA_Achr4P28850_001	Banana	nucleus	40.15	39.71
TraesCS6A01G265300.1	Wheat	nucleus	38.29	39.31
GSMUA_Achr11P...	Banana	nucleus	44.24	39.27
VIT_00s0203g00170.t01	Wine grape	nucleus	37.55	37.69
VIT_12s0134g00490.t01	Wine grape	nucleus	34.57	36.9
GSMUA_Achr5P18600_001	Banana	nucleus	44.98	36.34
GSMUA_Achr11P...	Banana	nucleus	38.29	35.89
GSMUA_Achr2P18090_001	Banana	nucleus	39.03	34.65
TraesCS2D01G444200.1	Wheat	nucleus	40.52	34.38
GSMUA_Achr5P03520_001	Banana	nucleus	38.66	34.32
Zm00001d026204_P001	Maize	nucleus	41.64	34.04
Os04t0517100-01	Rice	nucleus	21.93	33.15
GSMUA_Achr4P27350_001	Banana	nucleus	36.43	32.67
Zm00001d051520_P001	Maize	nucleus	40.89	32.35
TraesCS6B01G292500.1	Wheat	nucleus	39.78	32.33
TraesCS6D01G249200.1	Wheat	nucleus	40.15	32.14
Os02t0695200-01	Rice	nucleus	39.41	31.18
TraesCS2D01G444300.1	Wheat	nucleus	42.01	31.13
TraesCS2B01G466500.1	Wheat	nucleus	41.26	30.75
EES12768	Sorghum	nucleus	42.75	30.59
TraesCS2B01G466400.1	Wheat	nucleus	40.15	30.42
Os04t0594100-01	Rice	nucleus	41.64	30.19
TraesCS2A01G445500.1	Wheat	nucleus	40.89	29.97
Zm00001d026203_P001	Maize	nucleus	42.38	29.84
EES05685	Sorghum	nucleus	41.26	28.61
Zm00001d002476_P001	Maize	nucleus	42.01	27.9
VIT_19s0085g00050.t01	Wine grape	nucleus	36.8	27.2
HORVU6Hr1G067380.1	Barley	nucleus	39.41	24.04

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233135	wikigene:100233135	MapMan:15.5.2.1	ProteinID:ABC54968	ProteinID:ABC54968.1
ProteinID:ABW34392	ProteinID:ABW34392.1	ProteinID:CCB60114	ProteinID:CCB60114.1	EMBL:DQ277662	EMBL:EU181424
UniProt:F6HZJ9	EMBL:FN596502	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723
GO:GO:0009733	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	GO:GO:0050826	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYB14
wikigene:MYB14	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF954
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC61048	UniParc:UPI00015CAC36	ArrayExpress:VIT_07s0005g03340
EnsemblPlantsGene:VIT_07s0005g03340	EnsemblPlants:VIT_07s0005g03340.t01	unigene:Vvi.17367	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:6210930..6212669

Molecular Weight (calculated)

30174.4 Da

IEP (calculated)

7.055

GRAVY (calculated)

-0.664

Length

269 amino acids

Sequence
(BLAST)

001: MGRAPCCEKM GLKKGPWTPE EDQILVNYIH LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY LRPDIKRGNF TSEEEETIIE LHERLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLKHNH ATPPPKRHSL DASHVEKQQN PISSATNSRS ESLGYGPVLS PQQSFSDISS AATTTTTATM SDITTPCIKV DSLEEFPEMD
201: ENFWSEVLSS NKSGAAGDLP GAASGPQLQF PFSPRAVIGS SPYSTYDMDM EFWYNIFTRS GELHELSEI

Best Arabidopsis Sequence Match ( AT2G31180.1 )
(BLAST)

001: MGRAPCCEKM GVKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY LRPDIKRGNF TPQEEQTIIN LHESLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLSKNL NNGGDTKDVN GINETTNEDK GSVIVDTASL QQFSNSITTF DISNDNKDDI MSYEDISALI DDSFWSDVIS VDNSNKNEKK
201: IEDWEGLIDR NSKKCSYSNS KLYNDDMEFW FDVFTSNRRI EEFSDIPEF

Arabidopsis Description

MYB14Transcription factor MYB14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.