Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G224000.1 | Wheat | nucleus | 95.49 | 91.02 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 93.44 | 90.84 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 92.62 | 88.98 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 91.8 | 88.19 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 85.25 | 85.95 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 81.15 | 82.5 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 88.52 | 74.23 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 42.62 | 72.22 |
| Os02t0624300-01 | Rice | nucleus | 73.36 | 69.38 |
| Zm00001d017268_P001 | Maize | nucleus | 68.03 | 68.03 |
| EES07173 | Sorghum | nucleus | 71.72 | 67.83 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 59.43 | 66.21 |
| Zm00001d051149_P001 | Maize | nucleus | 70.08 | 65.77 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 19.26 | 55.29 |
| KRG97042 | Soybean | nucleus | 44.67 | 51.42 |
| KRH68789 | Soybean | nucleus | 43.44 | 50.72 |
| PGSC0003DMT400060168 | Potato | nucleus | 44.26 | 49.09 |
| Solyc05g055030.1.1 | Tomato | nucleus | 43.85 | 49.08 |
| AT1G06180.1 | Thale cress | nucleus | 49.18 | 48.78 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 53.69 | 48.7 |
| KRH34142 | Soybean | nucleus | 41.8 | 48.57 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 62.3 | 48.1 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 49.59 | 47.83 |
| KRG92419 | Soybean | nucleus | 53.28 | 47.79 |
| Solyc09g090130.2.1 | Tomato | nucleus | 52.46 | 47.76 |
| PGSC0003DMT400044362 | Potato | nucleus | 52.46 | 47.76 |
| KRH56057 | Soybean | nucleus | 31.15 | 47.5 |
| KRH69121 | Soybean | nucleus | 51.23 | 47.35 |
| Bra022831.1-P | Field mustard | nucleus | 47.54 | 47.15 |
| AT2G31180.1 | Thale cress | nucleus | 47.95 | 46.99 |
| KRH31704 | Soybean | nucleus | 50.82 | 46.97 |
| KRH34387 | Soybean | nucleus | 52.87 | 46.91 |
| Bra021708.1-P | Field mustard | nucleus | 47.95 | 46.8 |
| Solyc06g053610.2.1 | Tomato | nucleus | 50.0 | 46.04 |
| PGSC0003DMT400034878 | Potato | nucleus | 47.54 | 46.03 |
| PGSC0003DMT400042007 | Potato | nucleus | 50.41 | 45.9 |
| Bra015481.1-P | Field mustard | nucleus | 47.13 | 45.63 |
| Bra018267.1-P | Field mustard | nucleus | 47.13 | 45.45 |
| KRH32183 | Soybean | nucleus | 43.44 | 44.73 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 47.95 | 44.49 |
| KRG95664 | Soybean | nucleus | 52.87 | 44.33 |
| Solyc06g083900.2.1 | Tomato | nucleus | 46.31 | 44.31 |
| Solyc03g005570.2.1 | Tomato | nucleus | 45.49 | 44.22 |
| KRH67378 | Soybean | nucleus | 53.28 | 44.22 |
| PGSC0003DMT400051682 | Potato | nucleus | 45.9 | 43.41 |
| KRH22481 | Soybean | nucleus | 39.34 | 42.29 |
| KRH25458 | Soybean | nucleus | 38.93 | 40.6 |
| KRH56060 | Soybean | nucleus | 37.7 | 40.0 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 40.57 | 38.52 |
| KRH56061 | Soybean | nucleus | 38.11 | 38.43 |
| PGSC0003DMT400097096 | Potato | nucleus | 32.79 | 37.56 |
| Solyc07g054960.1.1 | Tomato | nucleus | 32.79 | 37.04 |
| PGSC0003DMT400035748 | Potato | nucleus | 34.84 | 36.8 |
| KRH25468 | Soybean | nucleus | 35.25 | 36.75 |
| Solyc12g005640.1.1 | Tomato | nucleus | 34.84 | 36.48 |
| KRH56056 | Soybean | nucleus | 34.84 | 36.17 |
| PGSC0003DMT400067318 | Potato | nucleus | 35.66 | 35.8 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 36.89 | 35.71 |
| PGSC0003DMT400097604 | Potato | nucleus | 30.74 | 35.71 |
| PGSC0003DMT400067321 | Potato | nucleus | 35.25 | 35.1 |
| Solyc07g055000.1.1 | Tomato | nucleus | 34.43 | 34.71 |
| KRH26874 | Soybean | nucleus | 35.66 | 34.66 |
| PGSC0003DMT400067322 | Potato | nucleus | 34.43 | 34.29 |
| Solyc07g053240.2.1 | Tomato | nucleus | 34.84 | 34.14 |
| Solyc07g053230.2.1 | Tomato | nucleus | 34.84 | 33.86 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 43.85 | 33.75 |
| PGSC0003DMT400039029 | Potato | nucleus | 32.79 | 32.92 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 36.07 | 32.84 |
| Solyc06g033870.1.1 | Tomato | nucleus | 33.2 | 32.79 |
| Solyc06g034000.1.1 | Tomato | nucleus | 31.56 | 32.63 |
| PGSC0003DMT400093355 | Potato | nucleus | 31.97 | 32.37 |
| Solyc03g093940.1.1 | Tomato | nucleus | 28.69 | 32.26 |
| Solyc03g093930.2.1 | Tomato | nucleus | 31.56 | 31.43 |
| PGSC0003DMT400051510 | Potato | nucleus | 31.15 | 31.28 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 42.62 | 30.95 |
| Solyc03g093890.2.1 | Tomato | nucleus | 31.97 | 30.83 |
| PGSC0003DMT400051513 | Potato | nucleus | 31.15 | 30.77 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 45.08 | 30.3 |
| PGSC0003DMT400021498 | Potato | nucleus | 29.51 | 30.0 |
| KRH56058 | Soybean | nucleus | 38.52 | 29.56 |
| KRH56059 | Soybean | nucleus | 38.93 | 29.32 |
| KRH25461 | Soybean | nucleus | 36.48 | 29.18 |
| KRH26875 | Soybean | nucleus | 37.3 | 29.07 |
| PGSC0003DMT400086165 | Potato | nucleus | 34.02 | 28.92 |
| PGSC0003DMT400070912 | Potato | nucleus | 30.33 | 28.46 |
| KRH25459 | Soybean | nucleus | 32.79 | 26.58 |
| PGSC0003DMT400021503 | Potato | nucleus | 19.26 | 24.48 |
| PGSC0003DMT400021501 | Potato | nucleus | 19.67 | 24.37 |
| Solyc07g054980.1.1 | Tomato | nucleus | 36.07 | 18.8 |
| CDX73801 | Canola | nucleus | 1.64 | 5.97 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G211200.1 | EnsemblPlantsGene:TraesCS6D01G211200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF695 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:298398587..298399457
Molecular Weight (calculated)
26516.9 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.575
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAPCCEKM GLKRGPWTAE EDMTLVAHIE QHGHSNWRAL PKQAGLLRCG KSCRLRWINY LRPDIKRGNF TSDEEEAIIQ VHAMLGNRWS TIAARLPGRT
101: DNEIKNVWHT HLKKRLESSS KPSGQAAPKR KAKKPAVAAS ALEGPTSEPA SSSPGQSLST SSATGYSMAS SLENTGSSSS EEFQIDDSFW SETLAMSADS
201: SGSGMESSDT FGVDSGAPSS SNDEMDFWVT LFMQASDIQS LSQI
101: DNEIKNVWHT HLKKRLESSS KPSGQAAPKR KAKKPAVAAS ALEGPTSEPA SSSPGQSLST SSATGYSMAS SLENTGSSSS EEFQIDDSFW SETLAMSADS
201: SGSGMESSDT FGVDSGAPSS SNDEMDFWVT LFMQASDIQS LSQI
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
Arabidopsis Description
MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.