Factsheet for Zm00001d002476_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12768	Sorghum	nucleus	78.77	84.84
Zm00001d026204_P001	Maize	nucleus	67.65	83.28
Zm00001d026203_P001	Maize	nucleus	77.78	82.46
Os04t0594100-01	Rice	nucleus	62.96	68.73
TraesCS2D01G444200.1	Wheat	nucleus	53.33	68.14
TraesCS2B01G466500.1	Wheat	nucleus	58.27	65.37
TraesCS2D01G444300.1	Wheat	nucleus	58.27	65.01
VIT_05s0049g01010.t01	Wine grape	nucleus	22.96	64.58
TraesCS2A01G445500.1	Wheat	nucleus	58.27	64.31
TraesCS2B01G466400.1	Wheat	nucleus	54.81	62.54
Zm00001d051520_P001	Maize	nucleus	47.65	56.76
PGSC0003DMT400034263	Potato	mitochondrion	11.6	55.29
GSMUA_Achr2P18090_001	Banana	nucleus	40.49	54.13
GSMUA_Achr11P...	Banana	nucleus	36.54	51.57
GSMUA_Achr5P03520_001	Banana	nucleus	38.27	51.16
GSMUA_Achr4P28850_001	Banana	nucleus	32.59	48.53
KRH56057	Soybean	nucleus	19.01	48.12
GSMUA_Achr6P31520_001	Banana	nucleus	28.64	47.54
KRH34142	Soybean	nucleus	24.44	47.14
Zm00001d017268_P001	Maize	nucleus	28.4	47.13
GSMUA_Achr4P27350_001	Banana	nucleus	34.57	46.67
Solyc05g055030.1.1	Tomato	nucleus	24.94	46.33
PGSC0003DMT400060168	Potato	nucleus	24.94	45.91
KRH68789	Soybean	nucleus	23.46	45.45
VIT_05s0049g01020.t01	Wine grape	nucleus	28.4	45.45
Zm00001d051149_P001	Maize	nucleus	29.14	45.38
KRG97042	Soybean	nucleus	23.46	44.81
KRH31704	Soybean	nucleus	28.15	43.18
KRH69121	Soybean	nucleus	27.9	42.8
AT1G06180.1	Thale cress	nucleus	25.93	42.68
AT2G31180.1	Thale cress	nucleus	26.17	42.57
Bra021708.1-P	Field mustard	nucleus	26.17	42.4
KRH22481	Soybean	nucleus	23.7	42.29
VIT_07s0005g03340.t01	Wine grape	nucleus	27.9	42.01
Solyc06g053610.2.1	Tomato	nucleus	27.41	41.89
Bra015481.1-P	Field mustard	nucleus	25.93	41.67
PGSC0003DMT400034878	Potato	nucleus	25.93	41.67
Solyc06g083900.2.1	Tomato	nucleus	26.17	41.57
Zm00001d025864_P001	Maize	nucleus	28.4	41.52
PGSC0003DMT400042007	Potato	nucleus	27.41	41.42
KRH32183	Soybean	nucleus	24.2	41.35
KRG92419	Soybean	nucleus	27.65	41.18
PGSC0003DMT400051682	Potato	nucleus	25.93	40.7
Bra022831.1-P	Field mustard	nucleus	24.69	40.65
Solyc03g005570.2.1	Tomato	nucleus	25.19	40.64
Zm00001d032694_P001	Maize	nucleus	27.16	40.44
KRH34387	Soybean	nucleus	27.41	40.36
PGSC0003DMT400044362	Potato	nucleus	26.67	40.3
Solyc09g090130.2.1	Tomato	nucleus	26.67	40.3
KRG95664	Soybean	nucleus	28.89	40.21
KRH67378	Soybean	nucleus	29.14	40.14
Bra018267.1-P	Field mustard	nucleus	24.94	39.92
Zm00001d014029_P001	Maize	nucleus	27.16	39.57
KRH56060	Soybean	nucleus	22.47	39.57
Zm00001d003064_P001	Maize	nucleus	28.64	39.46
VIT_12s0134g00480.t01	Wine grape	nucleus	24.94	39.3
KRH56061	Soybean	nucleus	22.96	38.43
KRH25458	Soybean	nucleus	21.98	38.03
Solyc07g054960.1.1	Tomato	nucleus	20.25	37.96
VIT_12s0134g00490.t01	Wine grape	nucleus	23.46	37.7
Solyc03g093940.1.1	Tomato	nucleus	20.0	37.33
PGSC0003DMT400067321	Potato	nucleus	22.47	37.14
PGSC0003DMT400067318	Potato	nucleus	22.22	37.04
Solyc06g034000.1.1	Tomato	nucleus	21.48	36.86
Solyc07g053230.2.1	Tomato	nucleus	22.72	36.65
KRH56056	Soybean	nucleus	21.23	36.6
PGSC0003DMT400035748	Potato	nucleus	20.74	36.36
KRH25468	Soybean	nucleus	20.99	36.32
PGSC0003DMT400097604	Potato	nucleus	18.77	36.19
PGSC0003DMT400097096	Potato	nucleus	19.01	36.15
Solyc06g033870.1.1	Tomato	nucleus	21.98	36.03
Solyc07g053240.2.1	Tomato	nucleus	21.98	35.74
Solyc12g005640.1.1	Tomato	nucleus	20.49	35.62
Solyc07g055000.1.1	Tomato	nucleus	21.23	35.54
PGSC0003DMT400067322	Potato	nucleus	21.48	35.51
VIT_00s0203g00170.t01	Wine grape	nucleus	23.46	35.45
PGSC0003DMT400051513	Potato	nucleus	21.23	34.82
PGSC0003DMT400051510	Potato	nucleus	20.74	34.57
PGSC0003DMT400039029	Potato	nucleus	20.49	34.16
PGSC0003DMT400093355	Potato	nucleus	20.25	34.02
PGSC0003DMT400070912	Potato	nucleus	21.73	33.85
KRH26874	Soybean	nucleus	20.74	33.47
Solyc03g093890.2.1	Tomato	nucleus	20.74	33.2
Solyc03g093930.2.1	Tomato	nucleus	20.0	33.06
KRH25461	Soybean	nucleus	24.44	32.46
PGSC0003DMT400021498	Potato	nucleus	19.01	32.08
KRH56059	Soybean	nucleus	25.43	31.79
KRH25459	Soybean	nucleus	22.72	30.56
KRH26875	Soybean	nucleus	23.46	30.35
KRH56058	Soybean	nucleus	23.7	30.19
PGSC0003DMT400086165	Potato	nucleus	20.25	28.57
PGSC0003DMT400021503	Potato	nucleus	12.59	26.56
PGSC0003DMT400021501	Potato	nucleus	12.84	26.4
Solyc07g054980.1.1	Tomato	nucleus	25.19	21.79
CDX73801	Canola	nucleus	1.48	8.96

Protein Annotations

EnsemblPlants:Zm00001d002476_P001	EnsemblPlants:Zm00001d002476_T001	EnsemblPlantsGene:Zm00001d002476	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF596	PFAM:PF00249	PFscan:PS51294	ProteinID:ONM14507.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000221AAB5	UniProt:A0A1D6E1F6	MapMan:15.5.2.1	:

Description

MYB-transcription factor 13myb domain protein 58

Coordinates

chr2:+:13590866..13592608

Molecular Weight (calculated)

42986.0 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.575

Length

405 amino acids

Sequence
(BLAST)

001: MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFSAEEEETV IKLHGLLGNK WSKIASCLPG
101: RTDNEIKNVW NTHLKKRVSP SGGEEEHGAA GSNKNKKKKK KKAAGGAEEP LPSPTPSPSP SSSTTTTANC SSGDSGEQQS NTSKEADDDE LDLENLEMMP
201: MLDDDPITFG FDMLVDPVPA PYGPAVSAFA SASRPTSPCA SSTSPPPPPG CAPLGVDDLL VLPEIDIDQE LWSIIDGNGD GGGDGGGSAC AVSAETSAPC
301: CQSNAPEPTT NGACATSHHG AAEEEGKEWW LEDLERELGL WGPVDVEDYH YQYPTGPHGL VANHPDPLPA MVDDPVSCYF QAGPASAVLQ EPGYSVTSSS
401: NLMGL

Best Arabidopsis Sequence Match ( AT1G79180.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH

Arabidopsis Description

ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.